github nextstrain/nextclade_data 2023-10-26--14-46-43--UTC
2023-10-26
on GitHub

latest releases: 2024-11-05--09-19-52Z, 2024-10-17--16-48-48Z, 2024-09-25--21-50-30Z...
12 months ago

New SARS-CoV-2 dataset version (tag 2023-10-26T12:00:00Z)

  • Fixed a bug in consensus sequence algorithm that treated ambiguous nucleotides as reference as opposed to unknowns. This only affected a few lineages with few designated sequences where the consensus was wrongly reference when it should have been mutated.
  • Pango lineages designated between 2023-09-20 and 2023-10-25 are now included, unfold below to see a list with designation dates:
Newly included lineages, with designation date in parentheses
  • XCN (2023-09-21)
  • FL.31 (2023-09-21)
  • FL.31.1 (2023-09-21)
  • FL.20.2 (2023-09-21)
  • FL.32 (2023-09-21)
  • FL.32.1 (2023-09-21)
  • FL.10.3 (2023-09-21)
  • FL.33 (2023-09-21)
  • FL.33.1 (2023-09-21)
  • FL.34 (2023-09-21)
  • FL.35 (2023-09-21)
  • JM.1 (2023-09-22)
  • JM.2 (2023-09-22)
  • GS.5 (2023-09-22)
  • GK.2.1.1 (2023-09-24)
  • EG.4.5 (2023-09-24)
  • CH.1.1.31 (2023-09-24)
  • JP.1 (2023-09-24)
  • CH.1.1.32 (2023-09-24)
  • JD.1.1.1 (2023-09-26)
  • JD.1.1.2 (2023-09-26)
  • XCP (2023-09-26)
  • EG.5.1.10 (2023-09-26)
  • GA.4.1.1 (2023-09-26)
  • FR.1.5 (2023-09-26)
  • EP.1.1 (2023-09-26)
  • EP.1.1.1 (2023-09-26)
  • HC.3 (2023-09-26)
  • FL.36 (2023-09-26)
  • HC.4 (2023-09-26)
  • FL.15.1 (2023-09-27)
  • FL.15.1.1 (2023-09-27)
  • FL.15.2 (2023-09-27)
  • FL.15.3 (2023-09-27)
  • JN.1 (2023-09-29)
  • JD.1.1.3 (2023-10-04)
  • JD.2 (2023-10-04)
  • GJ.1.2.6 (2023-10-04)
  • GJ.1.2.7 (2023-10-04)
  • JE.1.1 (2023-10-04)
  • GJ.1.2.8 (2023-10-04)
  • GJ.5 (2023-10-04)
  • GJ.5.1 (2023-10-04)
  • BA.2.86.2 (2023-10-12)
  • BA.2.86.3 (2023-10-12)
  • JQ.1 (2023-10-12)
  • JN.2 (2023-10-12)
  • JN.3 (2023-10-12)
  • GK.2.4 (2023-10-12)
  • HK.12 (2023-10-12)
  • EG.6.1.2 (2023-10-12)
  • HV.1.1 (2023-10-13)
  • HV.1.2 (2023-10-13)
  • HV.1.3 (2023-10-13)
  • HV.1.4 (2023-10-13)
  • HK.13 (2023-10-13)
  • HK.13.1 (2023-10-13)
  • HK.13.2 (2023-10-13)
  • HK.1.1 (2023-10-13)
  • HK.1.2 (2023-10-13)
  • HK.14 (2023-10-13)
  • HK.15 (2023-10-13)
  • EG.5.1.11 (2023-10-13)
  • JR.1 (2023-10-13)
  • JR.1.1 (2023-10-13)
  • GA.2.1 (2023-10-13)
  • GA.2.1.1 (2023-10-13)
  • GA.4.2 (2023-10-13)
  • GA.4.3 (2023-10-13)
  • GA.4.1.2 (2023-10-13)
  • HK.16 (2023-10-13)
  • HK.17 (2023-10-13)
  • HK.18 (2023-10-13)
  • HK.19 (2023-10-13)
  • XBB.2.3.15 (2023-10-13)
  • JS.1 (2023-10-13)
  • JS.2 (2023-10-13)
  • XCQ (2023-10-13)
  • XBB.2.3.16 (2023-10-13)
  • XBB.2.3.17 (2023-10-13)
  • JD.2.1 (2023-10-13)
  • GW.5.2 (2023-10-13)
  • GW.5.3 (2023-10-13)
  • GW.5.3.1 (2023-10-13)
  • HW.1.2 (2023-10-13)
  • HW.1.3 (2023-10-13)
  • XBC.1.6.5 (2023-10-13)
  • JT.1 (2023-10-13)
  • XBC.1.6.6 (2023-10-13)
  • GL.2 (2023-10-13)
  • GL.3 (2023-10-13)
  • XCR (2023-10-13)
  • GK.5 (2023-10-15)
  • GK.5.1 (2023-10-15)
  • GK.6 (2023-10-15)
  • GK.7 (2023-10-15)
  • GK.8 (2023-10-15)
  • GK.8.1 (2023-10-15)
  • GK.9 (2023-10-15)
  • GK.10 (2023-10-15)
  • GK.11 (2023-10-15)
  • GK.1.5 (2023-10-15)
  • GK.1.6 (2023-10-15)
  • GK.1.6.1 (2023-10-15)
  • GK.1.2.1 (2023-10-15)
  • GK.1.7 (2023-10-15)
  • GK.1.8 (2023-10-15)
  • GK.12 (2023-10-15)
  • GK.1.9 (2023-10-15)
  • XBB.1.16.25 (2023-10-15)
  • XCS (2023-10-15)
  • GK.1.1.1 (2023-10-15)
  • FU.1.1 (2023-10-15)
  • FU.1.1.1 (2023-10-15)
  • HG.3 (2023-10-15)
  • HG.1.1 (2023-10-15)
  • XBB.2.3.18 (2023-10-15)
  • GS.6 (2023-10-15)
  • GS.4.1.1 (2023-10-15)
  • GS.7 (2023-10-15)
  • GS.7.1 (2023-10-15)
  • GS.8 (2023-10-15)
  • GJ.6 (2023-10-15)
  • GJ.7 (2023-10-15)
  • JU.1 (2023-10-15)
  • JV.1 (2023-10-15)
  • JV.2 (2023-10-15)
  • JC.2 (2023-10-15)
  • JC.3 (2023-10-15)
  • JC.4 (2023-10-15)
  • JC.5 (2023-10-15)
  • JC.6 (2023-10-15)
  • XBB.1.41.3 (2023-10-15)
  • JW.1 (2023-10-15)
  • FL.30.1 (2023-10-15)
  • FL.13.2.1 (2023-10-15)
  • FL.13.4 (2023-10-15)
  • FL.13.4.1 (2023-10-15)
  • FL.13.5 (2023-10-15)
  • JG.4 (2023-10-15)
  • DV.7.1.3 (2023-10-15)
  • DV.7.1.4 (2023-10-15)
  • DV.7.1.5 (2023-10-15)
  • XCT (2023-10-15)
  • XBC.1.7.2 (2023-10-15)
  • XBC.1.7.1 (2023-10-15)
  • FL.23.2.1 (2023-10-15)
  • FL.23.2 (2023-10-15)
  • XCU (2023-10-15)
  • HH.2.1 (2023-10-15)
  • HH.3 (2023-10-15)
  • HH.4 (2023-10-15)
  • HH.5 (2023-10-15)
  • HH.6 (2023-10-15)
  • HH.7 (2023-10-15)
  • HH.8 (2023-10-15)
  • HH.8.1 (2023-10-15)
  • GE.1.4 (2023-10-15)
  • GE.1.5 (2023-10-15)
  • GE.1.6 (2023-10-15)
  • XBB.2.3.19 (2023-10-15)
  • JY.1 (2023-10-15)
  • JY.1.1 (2023-10-15)
  • JG.3.1 (2023-10-15)
  • HK.2.1 (2023-10-15)
  • HK.3.4 (2023-10-15)
  • HK.3.5 (2023-10-15)
  • HK.3.6 (2023-10-15)
  • HK.3.7 (2023-10-15)
  • HK.11.1 (2023-10-15)
  • FL.35.1 (2023-10-15)
  • GA.7 (2023-10-15)
  • GA.7.1 (2023-10-15)
  • GA.7.2 (2023-10-15)
  • GA.8 (2023-10-15)
  • GA.8.1 (2023-10-15)
  • GA.9 (2023-10-15)
  • GA.10 (2023-10-15)
  • XCV (2023-10-15)
  • XBB.2.3.20 (2023-10-15)
  • XCW (2023-10-15)
  • XBB.1.5.107 (2023-10-16)
  • JZ.1 (2023-10-16)
  • FD.5 (2023-10-16)
  • FD.5.1 (2023-10-16)
  • HE.2 (2023-10-16)
  • FE.1.1.5 (2023-10-16)
  • KA.1 (2023-10-16)
  • GN.1.2 (2023-10-16)
  • GN.1.3 (2023-10-16)
  • XCY (2023-10-16)
  • XCZ (2023-10-16)
  • FY.8 (2023-10-16)
  • FY.6.2 (2023-10-16)
  • FY.6.1 (2023-10-16)
  • FY.9 (2023-10-16)
  • FY.1.4 (2023-10-16)
  • FY.1.4.1 (2023-10-16)
  • FY.5.1 (2023-10-16)
  • FY.5.1.1 (2023-10-16)
  • HN.2 (2023-10-17)
  • HN.2.1 (2023-10-17)
  • HN.3 (2023-10-17)
  • HN.3.1 (2023-10-17)
  • HN.4 (2023-10-17)
  • HN.5 (2023-10-17)
  • HN.6 (2023-10-17)
  • GA.4.1.3 (2023-10-17)
  • XDA (2023-10-18)
  • XDB (2023-10-18)
  • XDC (2023-10-18)
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