nextstrain/nextclade_data 2023-02-01--16-16-41--UTC

2023-02-01

on GitHub

New dataset version (tag 2023-02-01T12:00:00Z)

SARS-CoV-2 datasets

• Change: Values output into the clade column of Nextclade csv/tsv files change from composite type: 20H (Beta, V2) to simple year-letter: 20H. If you do not want this change, simply use the column clade_legacy that is also output into the csv/tsv files. Other clade types are unchanged: clade_nextstrain (now same as clade), clade_who and Nextclade_pango. This migration was first mentioned three months ago in release 2022-10-31

• New Nextstrain clade 23A added, equivalent to Pango lineage XBB.1.5, see nextstrain/ncov#1043 for details

• Data update: 55 new Pango lineages, with designation date between 2023-01-10 and 2023-01-31, are now included, unfold below to see all the lineages:

  Newly included lineages, with designation date in parentheses

  • DU.1 (2023-01-12)
  • CH.1.1.5 (2023-01-13)
  • BQ.1.1.35 (2023-01-14)
  • DV.1 (2023-01-14)
  • BQ.1.1.36 (2023-01-14)
  • XBN (2023-01-14)
  • BA.5.1.32 (2023-01-15)
  • BA.5.2.50 (2023-01-21)
  • DW.1 (2023-01-23)
  • BQ.1.1.37 (2023-01-23)
  • BQ.1.1.38 (2023-01-24)
  • BF.7.14.1 (2023-01-25)
  • BQ.1.11.1 (2023-01-26)
  • BR.5 (2023-01-27)
  • BQ.1.1.39 (2023-01-27)
  • BQ.1.2.1 (2023-01-28)
  • DV.2 (2023-01-28)
  • DV.3 (2023-01-28)
  • CH.1.1.6 (2023-01-28)
  • CH.1.1.7 (2023-01-28)
  • CH.1.1.8 (2023-01-28)
  • CH.1.1.9 (2023-01-28)
  • BN.1.10 (2023-01-28)
  • BN.1.11 (2023-01-28)
  • BQ.1.1.40 (2023-01-28)
  • BQ.1.1.41 (2023-01-28)
  • BQ.1.1.42 (2023-01-28)
  • BQ.1.1.43 (2023-01-28)
  • BQ.1.1.44 (2023-01-28)
  • BQ.1.1.45 (2023-01-28)
  • BQ.1.1.46 (2023-01-28)
  • BQ.1.1.47 (2023-01-28)
  • CM.8.1.2 (2023-01-28)
  • CM.8.1.1 (2023-01-28)
  • DS.2 (2023-01-28)
  • XBB.1.10 (2023-01-28)
  • DY.1 (2023-01-28)
  • BF.7.14.2 (2023-01-28)
  • BF.7.14.3 (2023-01-28)
  • DZ.1 (2023-01-28)
  • XBB.1.5.1 (2023-01-28)
  • XBB.1.5.2 (2023-01-29)
  • XBB.1.5.3 (2023-01-29)
  • DN.1.1.1 (2023-01-30)
  • DN.1.1.2 (2023-01-30)
  • XBP (2023-01-30)
  • BQ.1.1.48 (2023-01-30)
  • BQ.1.1.49 (2023-01-30)
  • DZ.2 (2023-01-31)
  • XBB.7 (2023-01-31)
  • XBB.2.3 (2023-01-31)
  • XBB.1.11 (2023-01-31)
  • XBB.1.11.1 (2023-01-31)
  • DY.1.1 (2023-01-31)
  • DJ.1.1.1 (2023-01-31)

Seasonal flu datasets

• removes a synonymous mutation from the definition of A/H3N2 clade 2a.3b. Some viruses that should be in this clade didn't have this change.
• adds glycosylation to the remaining flu data sets