nextstrain/nextclade_data 2022-10-19

on GitHub

All SARS-CoV-2 datasets

New dataset version (tag 2022-10-19T12:00:00Z)

• New clade 22E (Omicron) (BQ.1*) added, see nextstrain/ncov#1012 for details

• The SARS-CoV-2 trees are now purely based on Pango consensus sequences, and no longer contain any actual sequences. This makes builds more stable and helps mitigate issues with sequence artefacts. For the Omicron part of the tree, no actual sequences were ever included, so this change only affects the pre-Omicron part of the reference tree.

• This release contains the first recombinant sublineages. These work in the same way as the other sublineages.

• Data update: New Pango lineages, with designation date between 2022-09-25 and 2022-10-19 are now included, unfold below to see all the lineages:

  New Pango lineages included in this release

  • BA.5.2.26 (designation date: 2022-09-29)
  • BA.5.2.27 (designation date: 2022-09-29)
  • BA.5.2.28 (designation date: 2022-09-29)
  • BA.5.1.22 (designation date: 2022-09-29)
  • BA.5.1.23 (designation date: 2022-09-29)
  • BA.5.1.24 (designation date: 2022-09-29)
  • BA.5.1.25 (designation date: 2022-09-29)
  • BF.26 (designation date: 2022-09-29)
  • BF.27 (designation date: 2022-09-29)
  • BF.28 (designation date: 2022-09-29)
  • CA.2 (designation date: 2022-09-30)
  • BA.2.75.9 (designation date: 2022-09-30)
  • CB.1 (designation date: 2022-09-30)
  • BL.1.3 (designation date: 2022-09-30)
  • BS.1.1 (designation date: 2022-09-30)
  • BA.2.85 (designation date: 2022-09-30)
  • BA.5.2.29 (designation date: 2022-09-30)
  • BE.4 (designation date: 2022-09-30)
  • BE.4.1 (designation date: 2022-09-30)
  • BE.4.1.1 (designation date: 2022-09-30)
  • BE.1.1.2 (designation date: 2022-09-30)
  • CC.1 (designation date: 2022-09-30)
  • BA.5.2.30 (designation date: 2022-09-30)
  • BA.5.2.31 (designation date: 2022-09-30)
  • CD.1 (designation date: 2022-09-30)
  • CD.2 (designation date: 2022-09-30)
  • BA.5.2.32 (designation date: 2022-09-30)
  • BA.5.2.33 (designation date: 2022-09-30)
  • CE.1 (designation date: 2022-09-30)
  • BA.5.1.26 (designation date: 2022-09-30)
  • BA.5.1.27 (designation date: 2022-09-30)
  • BA.5.1.28 (designation date: 2022-09-30)
  • CF.1 (designation date: 2022-09-30)
  • CG.1 (designation date: 2022-10-03)
  • XBB.1 (designation date: 2022-10-03)
  • BQ.1.4 (designation date: 2022-10-03)
  • XBC.1 (designation date: 2022-10-03)
  • BF.7.1 (designation date: 2022-10-05)
  • BA.5.3.5 (designation date: 2022-10-07)
  • BA.5.1.29 (designation date: 2022-10-07)
  • BQ.1.5 (designation date: 2022-10-11)
  • BQ.1.6 (designation date: 2022-10-11)
  • BQ.1.7 (designation date: 2022-10-11)
  • BQ.1.8 (designation date: 2022-10-11)
  • BQ.1.9 (designation date: 2022-10-11)
  • BA.5.6.3 (designation date: 2022-10-11)
  • BG.7 (designation date: 2022-10-11)
  • BA.4.6.2 (designation date: 2022-10-11)
  • BE.4.2 (designation date: 2022-10-11)
  • BA.4.6.3 (designation date: 2022-10-11)
  • CH.1 (designation date: 2022-10-11)
  • CH.2 (designation date: 2022-10-11)
  • CJ.1 (designation date: 2022-10-11)
  • CK.1 (designation date: 2022-10-11)
  • CL.1 (designation date: 2022-10-11)
  • CM.1 (designation date: 2022-10-11)
  • BR.4 (designation date: 2022-10-12)
  • CN.1 (designation date: 2022-10-12)
  • BA.5.2.34 (designation date: 2022-10-12)
  • XBD (designation date: 2022-10-12)
  • BA.2.38.4 (designation date: 2022-10-12)
  • BF.29 (designation date: 2022-10-12)
  • CH.1.1 (designation date: 2022-10-13)
  • BQ.1.10 (designation date: 2022-10-13)
  • BQ.1.11 (designation date: 2022-10-13)
  • BQ.1.12 (designation date: 2022-10-13)
  • BQ.1.13 (designation date: 2022-10-13)
  • BQ.1.14 (designation date: 2022-10-13)
  • BQ.1.15 (designation date: 2022-10-13)
  • BQ.1.16 (designation date: 2022-10-13)
  • XAY.1 (designation date: 2022-10-13)
  • XAY.2 (designation date: 2022-10-13)
  • BA.2.3.21 (designation date: 2022-10-13)
  • CM.2 (designation date: 2022-10-13)
  • BQ.2 (designation date: 2022-10-13)
  • BQ.1.17 (designation date: 2022-10-13)
  • CP.1 (designation date: 2022-10-13)
  • CP.1.1 (designation date: 2022-10-13)
  • BA.5.2.35 (designation date: 2022-10-13)
  • BE.5 (designation date: 2022-10-13)
  • CQ.1 (designation date: 2022-10-13)
  • BF.7.2 (designation date: 2022-10-13)
  • BN.1.1 (designation date: 2022-10-13)
  • CR.1 (designation date: 2022-10-13)
  • CR.2 (designation date: 2022-10-13)
  • CS.1 (designation date: 2022-10-14)
  • BL.2.1 (designation date: 2022-10-14)
  • BF.7.3 (designation date: 2022-10-14)
  • BF.30 (designation date: 2022-10-14)
  • BM.2.1 (designation date: 2022-10-14)
  • BM.2.2 (designation date: 2022-10-14)
  • BM.2.3 (designation date: 2022-10-14)
  • BM.6 (designation date: 2022-10-14)
  • BA.4.6.4 (designation date: 2022-10-14)
  • XBC.2 (designation date: 2022-10-14)
  • BN.1.2 (designation date: 2022-10-15)
  • BN.1.1.1 (designation date: 2022-10-15)
  • BN.1.3 (designation date: 2022-10-15)
  • BN.3 (designation date: 2022-10-15)
  • BR.1.1 (designation date: 2022-10-15)
  • BR.1.2 (designation date: 2022-10-15)
  • BA.2.75.10 (designation date: 2022-10-15)
  • BM.1.1.2 (designation date: 2022-10-15)
  • BQ.1.1.1 (designation date: 2022-10-15)
  • BQ.1.18 (designation date: 2022-10-15)
  • BQ.1.8.1 (designation date: 2022-10-15)
  • BQ.1.8.2 (designation date: 2022-10-15)
  • BQ.1.10.1 (designation date: 2022-10-15)
  • XBB.2 (designation date: 2022-10-15)
  • XBB.3 (designation date: 2022-10-15)
  • XBB.1.1 (designation date: 2022-10-15)
  • BA.5.2.36 (designation date: 2022-10-15)
  • CT.1 (designation date: 2022-10-15)
  • BN.3.1 (designation date: 2022-10-15)
  • BN.4 (designation date: 2022-10-15)
  • BN.5 (designation date: 2022-10-15)
  • BN.6 (designation date: 2022-10-15)
  • CA.3 (designation date: 2022-10-15)
  • CA.4 (designation date: 2022-10-15)
  • CA.5 (designation date: 2022-10-15)
  • BM.1.1.3 (designation date: 2022-10-15)
  • CM.3 (designation date: 2022-10-15)
  • BQ.1.19 (designation date: 2022-10-15)
  • BU.2 (designation date: 2022-10-15)
  • BL.1.4 (designation date: 2022-10-16)
  • BQ.1.20 (designation date: 2022-10-16)
  • CA.6 (designation date: 2022-10-16)
  • BF.11.1 (designation date: 2022-10-16)
  • BF.11.3 (designation date: 2022-10-16)
  • BF.11.2 (designation date: 2022-10-16)
  • BF.11.4 (designation date: 2022-10-16)
  • BF.11.5 (designation date: 2022-10-16)
  • BF.7.4 (designation date: 2022-10-16)
  • BF.7.5 (designation date: 2022-10-16)
  • BF.7.6 (designation date: 2022-10-16)
  • BF.7.8 (designation date: 2022-10-16)
  • BF.7.7 (designation date: 2022-10-16)
  • BF.7.9 (designation date: 2022-10-16)
  • BF.7.10 (designation date: 2022-10-16)
  • BF.7.11 (designation date: 2022-10-16)
  • BF.7.12 (designation date: 2022-10-16)
  • BE.1.4 (designation date: 2022-10-16)
  • BE.1.4.2 (designation date: 2022-10-16)
  • BE.1.4.1 (designation date: 2022-10-16)
  • BE.1.4.3 (designation date: 2022-10-16)
  • BE.1.4.4 (designation date: 2022-10-16)
  • CU.1 (designation date: 2022-10-16)
  • XBB.1.2 (designation date: 2022-10-17)
  • BT.2 (designation date: 2022-10-17)
  • BA.5.6.4 (designation date: 2022-10-17)
  • BA.5.2.37 (designation date: 2022-10-17)
  • BQ.1.1.2 (designation date: 2022-10-19)