New dataset version (tag 2022-09-09T12:00:00Z)
All SARS-CoV-2 datasets
- Data update: New pango lineages are included, see cov-lineages/pango-designation@fcad365...efabcb6 for new desigantions that are included
- Added 5 sample sequences from recently designated Pango lineages
Click to see all new lineages
BP.1 Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from pango-designation issue #1009
BA.2.3.20 Alias of B.1.1.529.2.3.20, found globally, unclear origin, from pango-designation issue #1013
BL.2 Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
BL.3 Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
BL.4 Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch
BM.1 Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965
BM.1.1 Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T
BM.2 Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T
BM.3 Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S
BM.4 Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from pango-designation issue #957
BM.4.1 Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from pango-designation issue #957
BR.1 Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M
BN.1 Alias of B.1.1.529.2.75.5.1, mainly found in India, pango-designation issue #994
BN.2 Alias of B.1.1.529.2.75.5.2, mainly found in India, pango-designation issue #1021
BN.2.1 Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S
BA.2.75.6 Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy
BA.2.75.7 Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy
BA.4.1.9 Alias of B.1.1.529.4.1.9, mainly found in USA, England and Mexico, from pango-designation issue #926
BA.4.6.1 Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from pango-designation issue #900
BA.5.1.15 Alias of B.1.1.529.5.1.15, Peru and Brazil lineage
BA.5.1.16 Alias of B.1.1.529.5.1.16, Japan lineage
BA.5.1.17 Alias of B.1.1.529.5.1.17, France lineage
BA.5.1.18 Alias of B.1.1.529.5.1.18, mainly found in USA, from pango-designation issue #930
BA.5.1.19 Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from pango-designation issue #999
BF.16 Alias of B.1.1.529.5.2.1.16, found in USA, from pango-designation issue #942
BF.17 Alias of B.1.1.529.5.2.1.17, Australia lineage
BF.18 Alias of B.1.1.529.5.2.1.18, Australia lineage
BF.19 Alias of B.1.1.529.5.2.1.19, Greece lineage
BF.20 Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries
BF.21 Alias of B.1.1.529.5.2.1.21, USA lineage
BF.22 Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from pango-designation issue #1010
BA.5.2.8 Alias of B.1.1.529.5.2.8, Israel lineage
BA.5.2.9 Alias of B.1.1.529.5.2.9, USA lineage
BA.5.2.10 Alias of B.1.1.529.5.2.10, Brazil lineage
BA.5.2.11 Alias of B.1.1.529.5.2.11, Philippines lineage
BA.5.2.12 Alias of B.1.1.529.5.2.12, Japan lineage
BA.5.2.13 Alias of B.1.1.529.5.2.13, mainly found in England, from pango-designation issue #959
BE.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1, found globally, from pango-designation issue #931
BQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from pango-designation issue #993
BE.1.3 Alias of B.1.1.529.5.3.1.1.3, Finland and Estonia lineage
BA.5.5.2 Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from pango-designation issue #938
BA.5.5.3 Alias of B.1.1.529.5.5.3, USA lineage, from pango-designation issue #1015
XAU Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from pango-designation issue #894
XAV Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from pango-designation issue #911
XAW Recombinant lineage of BA.2* and AY.122, Russia lineage, from pango-designation issue #895
XAY Recombinant lineage of BA.2 and AY.45, South Africa lineage, from pango-designation issue #844
XAZ Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from pango-designation issue #797
*BA.5.1.13 Withdrawn: Defined solely by Artic v3 artefacts, see issue #1029
Experimental BA.2 dataset (sars-cov-2-21L)
(Use this dataset via web as it is not guaranteed to be continued as the other datasets)
- Unaliased column: To help sort Nextclade web results by Pango lineage in a way that respects the meaning of aliases, there is now an unaliased column included, that writes out full lineage names as if there were no alias, e.g. BA.5.2 becomes B.1.1.529.5.2 and so forth. This has the additional advantage that you can learn what new aliases stand for.