New dataset version (tag 2022-08-09T12:00:00Z)
All Monkeypox datasets
The datasets now include hMPXV-1 lineages B.1.1 to B.1.5. See details in nextstrain/mpox#95
Sequences released to Genbank up to 2022-08-08 have been included in the new trees.
A B.1.5 sequence from Genbank has been added to the example sequences
MPXV (All clades)
Sequence KJ642615 (W-Nigeria/1971) has been excluded as it appears to be recombinant of clade 2 and clade 3. See details in nextstrain/mpox#102 - this sequence is not present in the other datasets, so no change there
Experimental, SARS-CoV-2 dataset relative to BA.2 (sars-cov-2-21L)
This release includes a new type of SARS-CoV-2 dataset that is recommended for web use only.
It uses the Wuhan reference but with the SNPs that occur in BA.2.
This way, the mutation view is less overloaded and individual Spike mutations are easier to spot by eye.
Only lineages that descend from BA.2, BA.4 or BA.5 are included in this dataset.
Please do not use this dataset for tools that rely on data continuity as the dataset is comparatively new and brittle and may not be maintained indenfinitely.
The current version has the tag 2022-07-26T12:00:00 and name sars-cov-2-21L