nextflow-io/nextflow v26.01.1-edge

Version 26.01.1-edge

on GitHub

• Add OSC 8 hyperlinks to task hashes in progress output (#6799) [8d266c7]
• Fix JGit resources not being closed in CLI commands (#6795) [908e4c7]
• Fix listDirectory() to follow symbolic links (#6821) [1ee59b3]
• Improve documentation of workflow outputs (#6822) [3f6c6b3]
• Bump ch.qos.logback@1.5.26 — fix false version mismatch warning in shadow JAR [0b97f4a]
• Bump ch.qos.logback@1.5.25 (CVE-2026-1225) [97dec3a]
• Bump com.gradleup.shadow@9.3.1 (CVE-2025-68161) [d31e6ed]

(26.01.0-edge)

• Add accelerator request to trace record (#6703) [00f35b3]
• Add aws.batch.forceGlacierTransfer config option (#6700) [e3bf315]
• Add CloudCacheConfig to register cloudcache config options (#6774) [ea8fea4]
• Add markdown output mode to lint command (#6715) [dad7c5d]
• Add missing provider credentials when updating the bare repo in multi-revision assets (#6698) [e517f4c]
• Add time-based caching for K8sConfig.getClient() (#6742) [73e5075]
• Add warning stats to lint summary output (#6714) [1bfc7bf]
• Add workflow manifest metadata to execution report (#6689) [49425d8]
• Allow collection-type params to be loaded from files (#6675) [8067145]
• Detect conda explicit files by content instead of extension (#6713) [f141116]
• Enable v2 syntax parser by default (#6643) [295f173]
• Exclude nf-test.config from lint by default (#6716) [c256c5f]
• Fix AWS Batch spot instance detection (#6722) [29356f6]
• Fix caching of task ext properties with the strict parser (#6696) [b5278c7]
• Fix compiler error in v2 parser with enums (#6781) [5d36e89]
• Fix different task hash with v2 parser (#6789) [66b7438]
• Fix error when checking whether an S3 bucket exists (#6706) [c1bd552]
• Fix false error in v2 parser when including config file from http url (#6753) [1732562]
• Fix false error with multi-line tuple assignment in v2 parser (#6786) [a73f0f9]
• Fix false error with optional param (#6811) [4657cc0]
• Fix fetching new remote branch in multi-revision mode (#6733) [24b858d]
• Fix isCompleted check in getNumSpotInterruptions (#6805) [7655848]
• Fix issue with topic file emissions in typed processes (#6688) [dcf0dec]
• Fix K8s job fallback to not return incorrect zero exit code (#6746) [5730679]
• Fix lint error formatting for errors at end of line (#6717) [51e0e03]
• Fix LogsCheckpoint thread blocking shutdown for up to 90 seconds (#6787) [54a5958]
• Fix: nextflow inspect not applying container settings from config (#6736) [c13f444]
• Fix params inclusion across modules in v2 parser (#6766) [3223ffe]
• Fix resolution of nested Groovy class in v2 parser (#6744) [10dff25]
• Fix spurious WARN when workflow fails before onFlowBegin (#6816) [5840037]
• Fix type inference in v2 ConfigDsl (#6800) [ed47164]
• Improve config syntax errors (#6721) [c07cc2e]
• Improve error message for invalid config statements (#6804) [4396959]
• Improve error messages for workflow outputs (#6785) [887443e]
• Move task hashing logic to TaskHasher class (#6572) [29f775f]
• Refactor GoogleBatchTaskHandler.newSubmitRequest for reduced complexity (#6687) [38c3910]
• Support multiple config option types in config spec (#6720) [ebb0890]
• Use conda-forge and bioconda channels by default (#5423) [48f9e3e]
• Bump Groovy to 4.0.30 (#6747) [ee00325]
• Bump Spock 2.4 (#6681) [15b2aa4]