github nextflow-io/nextflow v25.11.0-edge
Version 25.11.0-edge

pre-release9 hours ago
  • Add Google Batch LogsPolicy PATH option for logging to GCS (#6431) [5b61afe]
  • Add default value to Apptainer pull timeout config paramter (#6534) [f4548bd]
  • Add test case for printing config with nested includes (#2498) [0876d55]
  • Allow pre-existing write-protected plugins directory to be used (#6594) [33943b5]
  • Change log level from warn1 to debug1 for K8s Job Pod Warnings (#6523) [74d1b78]
  • Fix Do not delete K8s jobs when ttlSecondsAfterFinished is set (#6597) [51042db]
  • Fix Fusion license JWT token refresh by reusing TowerClient [498125d]
  • Fix Invalid type error detection [9e3aeed]
  • Fix K8sTaskHandlerTest method name typos [bcf81d9]
  • Fix asset detection when item is not a sibling of the executed script (#6605) [1ca327c]
  • Fix csv splitter when skipping empty lines (#6586) [253666d]
  • Fix documentation of unique operator (#6541) [6b8aedf]
  • Fix error with dynamic directives with named arguments (#6550) [064f57f]
  • Fix false config validation warnings for process selectors (#6542) [4db05a0]
  • Fix false error with task ext blocks in strict syntax (#6569) [fe8065a]
  • Fix incorrect AWS region when specifying a S3 regional endpoint (#6530) [0989d31]
  • Fix invalid cache write when cacheable split operation fails (#6588) [9930e35]
  • Fix issue with optional workflow output (#6519) [75e4714]
  • Fix issues with rsync stage-out mode (#6587) [bcac901]
  • Fix security vulnerabilities in org.json dependency [c7161c2]
  • Fix unordered completed parts in AWS multipart upload (#6560) [1020952]
  • Fix TowerJsonGenerator thread-safety issue (#6619) [579cd6e]
  • Fix Plugins.init() in run command to original location (#6568) [ba6be77]
  • Fix security vulnerabilities for wiremock (#6607) [0f86933]
  • Fix replace complete plotly bundle with smaller more specific one (#6527) [fdab342]
  • Fix stageFileEnabled flag to control .command.stage file creation (#6618) [2d117cb]
  • Improve error message for invalid accelerator resource (#6585) [7c40ee5]
  • Improve error message for invalid contribution type in manifest contributors (#6593) [d440040]
  • Issue templates: add external links via config (#6563) [3f60878]
  • Move task error formatting logic into separate class (#6551) [7b664ce]
  • Optimize exit code handling by relying on scheduler status for successful executions (#6484) [454a2ae]
  • Remove unnecessary runtime checks with strict syntax (#6539) [9e296b8]
  • Remove unused BatchHelper class (#6547) [1c543c0]
  • Remove wiremock-groovy dependency and update tests using this dependecy (#6611) [6f4cf1a]
  • Update bundled Docker runtime to 19.03.15 (#6565) [6c08137]
  • Update migration timeline for plugin registry (#6543) [ecfb62d]
  • Update trace table columns in Reports page (#6483) [064ef34]
  • Upgrade from Apache Commons Lang 2.6 to Commons Lang3 3.18.0 (#6511) [9b2ccb8]
  • docs: Add admonition to clarify plugin provider and org (#6536) [e9ab1bb]
  • docs: Add admonition to inputs and index words (#6461) [4eee1b6]
  • docs: Improve task previousTrace documentation (#6538) [53c28b8]
  • docs: Mark Fusion.tags as supported only for S3 (#6601) [cc0d177]
  • docs: Update feature flags page (#6504) [4dc9945]
  • docs: Update task directives (#6506) [ce680c5]
  • Bump Fusion to version 2.5 (#6557) [ec228f6]
  • Bump Gradle 9.2.0 [2657524]
  • Bump groovy 4.0.29 (#6510) [a30dbbb]
  • Bump logback to version 1.5.20 [462eec5]
  • Bump org.bouncycastle:bcpkix-jdk18on from 1.78.1 to 1.79 (#6537) [ede076b]
  • Bump nf-amazon@3.5.0
  • Bump nf-azure@1.21.0
  • Bump nf-google@1.24.0
  • Bump nf-k8s@1.3.0
  • Bump nf-tower@1.18.0
  • Bump nf-wave@1.17.0

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