- Add Claude Code GitHub Action integration (#6389) [1073a1d]
- Add Value type for dataflow values (value channels) (#6372) [8de2339]
- Add descriptions to plugin MANIFEST.MF files (#6348) [d558ee3]
- Add null checks in TowerClient onFlowComplete method (#6384) [de968f0]
- Add plugins redirects (#6385) [3fb8a58]
- Add test for prefetchMetadata call in pullPlugins method (#6396) [a5c19b8]
- Add Type annotations (#6278) [0008707]
- Fix CLI param override in strict config parser (#6377) [e146b41]
- Fix GString equality checks with String (#6330) [01e1888]
- Fix GitHub Actions commit message parsing to use only first line [5bc9162]
- Fix NPE when contributors omit contribution field in manifest (#6383) [dd2154c]
- Fix Platorm refresh token handling [ba78ef7]
- Fix duplicate page and redirects in docs (#6386) [efba138]
- Fix false warning for map config options (#6359) [872d124]
- Fix groupTuple operator to handle GString vs String keys consistently (#6400) [206cc01]
- Fix incorrect spelling in docs (#6336) [00150f2]
- Fix null reference error in workflow output (#6374) [d1f43c5]
- Fix typo in task config eval (#6392) [e60978f]
- Implement Process Execution with Command-Line Parameter Mapping (#6381) [experimental] [6d5a0bd]
- Improve secret loading documentation and rename ConfigNullProvider to EmptySecretProvider [9e4c975]
- Minor TowerClient improment (#6387) [d743667]
- New executor for Fujitsu Technical Computing Suite (TCS) (#5928) [dd87b2f]
- Preserve method parameter names in nf-lang JAR (#6355) [83160d6]
- Refactor Wave and Tower client to use lib-httpx library (#6354) [148a8a1]
- Replace custom JWT refresh logic with standardized HxClient (#6398) [c68c1e9]
- Replace custom retry strategy with HxClient in RepositoryProvider (#6351) [af8ba8c]
- Simplify plugin download implementation (#6349) [a3db0f8]
- Support standard environment variables for ANSI terminal output (#6362) [ede1344]
- Update core plugins to use Nextflow Gradle plugin (#6379) [a7e4ea8]
- Warn when file() matches a collection of files (#5507) [726bf48]
- Workflow params (#5929) [876d805]
- Bump netty deps to version 4.1.124.Final [9e8d596]