[0.8.1] (03 Oct 2024)

This release of Dorado includes fixes and improvements to the Dorado 0.8.0 release, including corrected configuration for DNA v5 SUP-compatible 5mC_5hmC and 5mCG_5hmCG models, improved cDNA poly(A) tail estimation for data from MinION flow cells, reduced basecaller startup time on supported GPUs, and more.

• f74d891 - Corrected bug causing dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2 to call CpG contexts only and dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2 to call all contexts
• eb46494 - Improve cDNA poly(A) tail estimation for MinION flow cells
• 762e886 - Cache batch sizes to significantly reduce basecaller startup time on supported GPUs
• 22269a8 - Prevent "Trim interval is invalid for sequence" error when performing trimming
• f156ae6 - Prevent write permission error for model download folder when file write is not required
• fcb9d53 - Include run name in output files from dorado demux even if input files are FASTQ
• a4c9649 - BED file handling: only split columns on tabs, not spaces; load files with spaces in region names
• e62cbc8 - Allow comment lines in the middle of the BED file
• f15c0b3 - Fix compilation in AppleClang 16