mims-harvard/ToolUniverse v1.5.1

Release v1.5.1

on GitHub

What's Changed

• Start the built .mcpb in CI instead of only inspecting it by @gasvn in #603
• Publish the .mcpb from CI instead of by hand by @gasvn in #604
• Retry the publish verification before calling it a mismatch by @gasvn in #605
• Update stale tool and skill counts in the setup skill by @gasvn in #607
• Feature: resolve gene and protein identifiers across namespaces by @gasvn in #615
• Feature: gather a drug profile from several databases in one call by @gasvn in #616
• fix: coerce HumanBase gene_list strings into gene names by @krudo-taco in #611
• Fix: Cellosaurus fields emptied the record instead of trimming it by @gasvn in #619
• Fix: page_size did nothing, a documented annotation_type returned nothing, and HTTP errors hid why by @gasvn in #620
• Fix: OmniPath read limit=0 as a result and refused list gene input (supersedes #612) by @gasvn in #622
• Fix: CellMarker hid records behind an unreachable cap; SCP matched everything by @gasvn in #623
• fix: accept lowercase Europe PMC article ID prefixes by @krudo-taco in #608
• fix: reject blank Single Cell Portal search queries by @krudo-taco in #609
• fix: reject blank CellMarker gene symbols by @krudo-taco in #610
• Fix: HumanBase returned networks for genes nobody asked about (builds on #611) by @gasvn in #621
• Fix: blank CellMarker gene_symbol reported the wrong kind of error (follow-up to #610) by @gasvn in #625
• Fix: eight tools converted an input type their schema refused by @gasvn in #626
• Fix: reported counts described lists longer than the ones returned by @gasvn in #628
• Fix: 119 tools were missing from the Python SDK, and the build could not show why by @gasvn in #629
• Fix: change-detection hashes depended on the checkout directory by @gasvn in #630
• Fix: the secrets ignore rules hid source files, including a generated tool wrapper by @gasvn in #631
• Fix: stop an identifier search from trimming away the label text it returns by @gasvn in #618
• Fix: one failed abstract fetch no longer ends a Europe PMC guideline search by @gasvn in #627
• Feature: exact RxNorm lookup that reports every match instead of choosing one by @gasvn in #624
• Release tooluniverse 1.5.1 by @gasvn in #633

Full Changelog: v1.5.0...v1.5.1