Breaking changes:
- Not really a change in itself from our code. But you'll probably need to change postgres version from 'latest' to '17' in
docker-compose.yml. This is to avoid the issue with the breaking changes of the Postgres containerization team for the underlying paths to where database files are located.
Non-breaking changes:
- Sequencing Depth for Samples and Libraries accepts 1 decimal position, and any positive values (before it would only take 10 as minimum.)
- Indices, when loading a sequencing request can have any length above 5 now.
- IndexType has no read length anymore.
- Index Generator now allows having indeces of different lengths, simply focusing on the overlapping cycles.
- Archival of IndexPairs will also propagate the action to its constituent indices, and (if the pair is the last in such grouping) to IndexType too. Unarchival behaves similarly.
- Downloading SampleSheet is now customized for the case of sequencer names that start with
AVITI, given that new emerging technologies are giving better results. In such case, the i5 is reverse complemented, so that we keep our 'standardization' effort as we have always done (centered on NovaSeq.) - Potential fix to BarcodeCounter bug (generate fn. was using its default argument, which would take the year from when module is loaded, not when the fn. is called) that caused to be reset every year when a new deployment was made.