What's Changed
- Add numerically stable cross entropy loss by @jgraving in #856
- Fix AlignedUMAP.update by @hndgzkn in #861
- Fixed numerical issue in make_epochs_per_sample by @GregDemand in #875
- Fix in1d() return type issue by @GregDemand in #877
- Fix use of relation_dicts in expand_relations by @GregDemand in #880
- Fix indexing issue with relations array by @GregDemand in #882
- Added uniqueness flag to intersect1d by @SkBlaz in #896
- Fix typos in docstrings by @sky-2002 in #903
- consistency between install_requires and requirements.txt by @jlmelville in #908
- Search index is optional for precomputed_knn by @jlmelville in #909
- Fix doc build (a bit) by @jlmelville in #910
- Fix the doc build by @jlmelville in #913
- PCA initialization option by @jlmelville in #911
- Allow points to be passed to umap.plot.points by @dribnet in #912
- feature: add ability to specify tools to interactive charts so richer exploration with images and other content is possible by @suneeta-mall in #858
- tighten test_umap_trustworthiness_random_init bound by @austereantelope in #850
- tighten test_umap_sparse_trustworthiness bound by @austereantelope in #851
- Get intermediate results at different epochs by @matthieuheitz in #696
- Update penguins doc by @jlmelville in #914
- ignore force approximation with precomputed knn by @jlmelville in #927
- Update deprecated matplotlib colormap registry by @yannikschaelte in #929
- Esm metagenomic atlas to Interactive Visualizations by @BioGeek in #936
get_feature_names_outforUMAP+ tests by @CarloLepelaars in #939- Updated densMAP citation in README by @hhcho in #945
- sklearn parwise distances doesn't support np.matrix anymore by @lmcinnes in #946
- Minor performance improvements by @rohan-shah-nearmap in #948
- Anticipate stricter asarray handling in numpy by @lmcinnes in #952
- Aligned umap issues by @GregDemand in #958
- Update densmap_demo.rst by @aizardar in #973
- Allow UMAP to accept data with nan or inf values by @SamKlier in #977
- new spectral initialization option: a truncated SVD-warmed lobpcg by @jlmelville in #924
- fix: fix numpy.int and numpy.float deprecation to be compatible with numpy >= 1.20.0 by @TTTPOB in #1010
- Docs | Add missing space in precomputed_k-nn.rst by @Odessit007 in #1014
- Docs | Fix typo in supervised.rst by @Odessit007 in #1013
- Update README.rst by @dsblank in #1016
- Fix docstring formatting of init parameter of UMAP class by @felixdivo in #1019
- Plotting Fix: fixing capitalization for Bokeh plotting for version 3.1.1 compatibility by @msakarvadia in #1023
- Issue warning if setting n_jobs and random_state by @crypdick in #1002
- docs : Fix formatting in UMAP class documentation by @Hamza-nabil in #992
- docs: minor typos fix by @0xTiger in #983
- [TYPO] Update precomputed_k-nn.rst by @cakiki in #922
- Bug fix round pre0.5.4 by @lmcinnes in #1038
- Fix unit tests by @hamelin in #1031
- fix relations_dictionary problems which prevents from correctly updating aligned_umap by @hndgzkn in #863
- Drop requirements.txt, embrace setup.py for deps by @hamelin in #1044
- Fix unit tests involving spectral initialization by @hamelin in #1043
- Drop dependency on TBB on non-Intel deployments by @hamelin in #1045
- Add azure devops pipeline to push to PyPI by @gclendenning in #1053
New Contributors
- @jgraving made their first contribution in #856
- @hndgzkn made their first contribution in #861
- @GregDemand made their first contribution in #875
- @SkBlaz made their first contribution in #896
- @sky-2002 made their first contribution in #903
- @dribnet made their first contribution in #912
- @suneeta-mall made their first contribution in #858
- @matthieuheitz made their first contribution in #696
- @yannikschaelte made their first contribution in #929
- @BioGeek made their first contribution in #936
- @CarloLepelaars made their first contribution in #939
- @rohan-shah-nearmap made their first contribution in #948
- @aizardar made their first contribution in #973
- @SamKlier made their first contribution in #977
- @TTTPOB made their first contribution in #1010
- @Odessit007 made their first contribution in #1014
- @dsblank made their first contribution in #1016
- @msakarvadia made their first contribution in #1023
- @crypdick made their first contribution in #1002
- @Hamza-nabil made their first contribution in #992
- @0xTiger made their first contribution in #983
- @cakiki made their first contribution in #922
- @hamelin made their first contribution in #1031
- @gclendenning made their first contribution in #1053
Full Changelog: 0.5.3...0.5.4