github genetics-statistics/GEMMA 0.98.1
GEMMA version 0.98.1

latest releases: v0.98.5, v0.98.4, 0.98.3...
5 years ago

Bug fix release

  • Fixes regression on Plink analysis with missing data (#188 thank you @voichek)

To install the image, download and

md5sum gemma-0.98.1.gz
8e7eda8091e4c4e587d91cf9d94ed147  gemma-0.98.1.gz
gzip -d gemma-0.98.1.gz
chmod a+x gemma-0.98.1
./gemma-0.98.1

GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018

type ./gemma -h [num] for detailed help

The binary images were reproducibly built on x86_64 with

Generation 1    Nov 03 2018 12:30:38    (current)
  guix ff34941
    repository URL: https://git.savannah.gnu.org/git/guix.git
    commit: ff349415b27cc764fd7168ef35ca76c3b8b05889

guix environment -C guix --ad-hoc gcc gdb gfortran:lib gsl eigen openblas zlib bash ld-wrapper perl
make clean && make -j 16 && make fast-check
for x in `ldd bin/gemma|cut -d ' ' -f 3` ; do realpath $x ; done
/gnu/store/kf8pva0pgwg6yrcpa52iri293j8fc56q-gsl-2.5/lib/libgsl.so.23.1.0
/gnu/store/fxiwj2wpp11sif613axdax7gmwzsg6kp-zlib-1.2.11/lib/libz.so.1.2.11
/gnu/store/zpm494j02m6snmvcjxcdqxkgwx43nkmj-openblas-0.3.2/lib/libopenblasp-r0.3.2.so
/gnu/store/4ik1aw34nxs4372xlimvnaq2ilhclwpw-gfortran-8.2.0-lib/lib/libgfortran.so.5.0.0
/gnu/store/bmaxmigwnlbdpls20px2ipq1fll36ncd-gcc-8.2.0-lib/lib/libquadmath.so.0.0.0
/gnu/store/bmaxmigwnlbdpls20px2ipq1fll36ncd-gcc-8.2.0-lib/lib/libstdc++.so.6.0.25
/gnu/store/l4lr0f5cjd0nbsaaf8b5dmcw1a1yypr3-glibc-2.27/lib/libm-2.27.so
/gnu/store/bmaxmigwnlbdpls20px2ipq1fll36ncd-gcc-8.2.0-lib/lib/libgcc_s.so.1
/gnu/store/l4lr0f5cjd0nbsaaf8b5dmcw1a1yypr3-glibc-2.27/lib/libpthread-2.27.so
/gnu/store/l4lr0f5cjd0nbsaaf8b5dmcw1a1yypr3-glibc-2.27/lib/libc-2.27.so
/gnu/store/1yym4xrvnlsvcnbzgxy967cg6dlb19gq-gfortran-5.5.0-lib/lib/libgfortran.so.3.0.0

# build static image
make clean && make WITH_GFORTRAN=1 static -j 16 && make check

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