galaxyproject/galaxy v26.0.1

on GitHub

What's Changed

🔧 Enhancements

• [26.0] Update Openlayers by @guerler in #22503
• [26.0] Replace per-term joins in workflow search with EXISTS subqueries by @mvdbeek in #22548
• [26.0] add TEI XML datatype by @bgruening in #22718

🐛 Bug Fixes

• [26.0] Set job.history to fix email PJA by @mvdbeek in #22439
• [26.0] Fix testing, publishing and dependencies of packages by @nsoranzo in #22445
• [26.0] Change Tool Shed /api/users/current from 404 to 403 when not authenticated by @natefoo in #22443
• [26.0] Fix filtering of Data Source Tools in Upload Activity by @davelopez in #22465
• [26.0] Fix job files API purged input check by @mvdbeek in #22436
• [26.0] Move job-level filters inside CTE in job cache query by @mvdbeek in #22454
• [26.0] Fix unqualified structured_like resolution, add linters by @mvdbeek in #22432
• [26.0] Avoid premature commit when copying MetadataFile by @mvdbeek in #22422
• [26.0] Respect workflow object store preference for mapped step outputs by @mvdbeek in #22409
• [26.0] Accept bare ftype as valid test output check by @jmchilton in #22483
• [26.0] Fix IndexError in SplitPairedAndUnpairedTool for unpaired elements by @ernestprovo23 in #22282
• [25.1] Use correct timezone to compare step scheduling by @mvdbeek in #22446
• [26.0] Enforce file source access during dataset materialization by @mvdbeek in #22486
• [26.0] Fix UI no longer auto-decompressing files. by @jmchilton in #22490
• [26.0] Fix sample sheet upload without sample-sheet-specific columns by @mvdbeek in #22488
• [26.0] Fix get_structure when it is passed a DCE with nested elements by @mvdbeek in #22453
• [26.0] Drop --frozen-lockfile from prebuilt client install by @dannon in #22508
• [26.0] Strip whitespace from URIs in get_file_source_path by @mvdbeek in #22506
• [26.0] Truncate dataset name in export arcname to avoid OSError by @mvdbeek in #22518
• [26.0] Fix UnicodeError on empty-label URLs in fetch validation by @mvdbeek in #22526
• [26.0] Fix data manager URL for managers with '+' version suffix by @mvdbeek in #22525
• [26.0] Hide hidden tools in the tool form by @bgruening in #22215
• [26.0] Treat paused inputs as not-ready in DatabaseOperationTool by @mvdbeek in #22529
• [26.0] Add debug middleware and regression tests for blocked main event loop by @mvdbeek in #22207
• [26.0] Backport rocrate<0.15.0 pin by @nsoranzo in #22537
• [26.0] Fix WorkflowAnnotation wrapping inconsistencies by @ahmedhamidawan in #22539
• [26.0] Handle list-valued tool_id in ToolRunner.__get_tool by @mvdbeek in #22545
• [26.0] Fix TypeError when generating tour for tool with boolean conditional case by @ahmedhamidawan in #22532
• [26.0] Fix notification channels not processed correctly by @davelopez in #22556
• [26.0] Cancel background traffic before login/register so session cookie isnt clobbered by @mvdbeek in #22564
• [26.0] Fix admin resend-activation email missing hostname by @mvdbeek in #22568
• [26.0] Fix crash merging structurally invalid nested collections by @mvdbeek in #22546
• [26.0] Fixes looks_like_flattened_repeat_key helper by @guerler in #22578
• [26.0] Raises error if decoding fails during relabeling from file by @guerler in #22595
• [26.0] Fix silent OIDC failure when pkce is missing by @mvdbeek in #22547
• [26.0] Catch end of file error when reading corrupted tabular dataset by @guerler in #22523
• [26.0] Preserve falsy workflow parameter values on workflow rerun by @mvdbeek in #22601
• [26.0] Exclude user defined tools from requiring galaxy env by @mvdbeek in #22628
• [26.0] Adds missing TLS support for FTP configurations in templates by @davelopez in #22657
• [26.0] Fixes GTN integration missing router by @davelopez in #22673
• [26.0] Fix repository sort order to fix incremental tool shed search updates work by @mvdbeek in #22663
• [26.0] Fix Zenodo/Invenio browsing of own records by @davelopez in #22690
• [26.0] Ensure workflow editor always inserts latest tool version by @ahmedhamidawan in #22693
• [26.0] Fix workflow rerun for unset optional data inputs by @mvdbeek in #22664
• [26.0] Fix data source tool redirect back to Galaxy SPA by @mvdbeek in #22720
• [26.0] Fix webdav file download by @davelopez in #22683
• [26.0] Raise ToolInputsNotReady for unpopulated structured_like target by @mvdbeek in #22552
• [26.0] Update Vintent by @guerler in #22660
• [26.0] Fix error handling for Help Forum integration by @davelopez in #22604
• [26.0] Fix HDA leak in tool form for data managers (#22674) by @mvdbeek in #22724
• [26.0] Fix job access check for collection-only outputs by @mvdbeek in #22603
• [26.0] Reject malformed dataset ids in data tool parameter by @mvdbeek in #22617
• [25.1] Backport FastAPI/Starlette upgrade for BadHost (CVE-2026-48710) by @mvdbeek in #22778
• [25.1] update the binary.py for spatialdata so it also works if the file has… by @nilchia in #22802
• [26.0] Fix FlexPanel drag handle gets stuck when dragging over iframe by @ahmedhamidawan in #22810
• [26.0] Fix client linting by @nsoranzo in #22815
• [26.0] Fix ConnectedValue leak for omitted optional inputs inside groups by @mvdbeek in #22820
• [26.0] Fix missing scripts in built wheels by @jdavcs in #22825

New Contributors

• @ernestprovo23 made their first contribution in #22282

Full Changelog: v26.0.0...v26.0.1