galaxyproject/galaxy v25.0.4

on GitHub

What's Changed

• [25.0] Fix select field cut off in dataset view by @ahmedhamidawan in #20947
• [25.0] Deactivate user file source on unknown error by @mvdbeek in #20962
• [25.0] Check for expiration in refresh token dictionary by @jdavcs in #20954
• [24.2] Fix test_multiple_decorators unit test for FastAPI 0.118.0 by @nsoranzo in #20982
• [25.0] Don't create workflow outputs to recover input parameter outputs by @mvdbeek in #20980
• [25.0] Skip sam metadata if we have too many references by @mvdbeek in #20820
• [25.0] Add Auspice JSON datatype by @pvanheus in #20466
• [25.0] Backport of #20984 by @davelopez in #20994
• [25.0] Improves zip file type detection for uploads under windows by @caroott in #20999
• [25.0] Add safetensors datatype by @nilchia in #20754
• [25.0] Add LAS and LAZ file format by @bgruening in #21049
• [25.0] Fix PUT /api/workflows for user defined tools by @mvdbeek in #20987
• [25.0] Fix InvalidRequestError when saving workflow step with dynamic tool by @mvdbeek in #21056
• [25.0] New datatype addition: beast.trees datatype by @SaimMomin12 in #21055
• [25.0] Add display_in_upload to LAZ and LAS by @bgruening in #21060
• [25.0] Fix has_size assertion by @bernt-matthias in #21081
• [25.0] Fix workflow run form input restrictions by @mvdbeek in #21095
• [25.0] Run landing request state through validator by @mvdbeek in #21087
• [25.0] New datatype addition: gam for vg toolkit by @SaimMomin12 in #21096
• [25.0] Prefix download link by @martenson in #21112
• [25.0] Use job cache also for implicit conversions by @mvdbeek in #21021
• [25.0] Create new datasets when creating skipped database operation tool outputs by @mvdbeek in #21142
• [25.0] Fix workflow landing rendering if public query param not provided by @mvdbeek in #21165
• [25.0] Backport Fix proxy endpoint encoding by @davelopez in #21184
• [25.0] Harden proxy redirect validation by @davelopez in #21185
• [25.0] Backport fix anndata datatype update by @nilchia in #21111
• [25.0] Fix MIME type for LAZ datatype by @kysrpex in #21202
• [25.0] Fix optional param unset in RO-Crate export by @davelopez in #21192
• [25.0] Require OK datasets for filtering empty datasets by @bernt-matthias in #21023
• [25.0] Fix refresh token expiration retrieval logic by @nuwang in #21213
• [25.0] Fix direct tool execution not using the latest version by @jmchilton in #21240
• [25.0] Add SpatialData datatype by @nilchia in #21000
• [25.0] support ZARR v3 for Spatialdata dt by @nilchia in #21265
• [25.0] Swap to NPM trusted publishing for prebuilt client by @dannon in #21290
• [25.0] Fix proxy url validation for non-printable characters by @davelopez in #21280
• [25.0] Store pulsar job prep error messages by @mvdbeek in #21013

New Contributors

• @caroott made their first contribution in #20999

Full Changelog: v25.0.3...v25.0.4