galaxyproject/galaxy v23.1.2

on GitHub

What's Changed

• [23.1] Fix History item deletion/undeletion reactivity with filter and ToolForm input field by @ahmedhamidawan in #16889
• [23.1] Fix unbound runner variable when there is an error in the job config by @mvdbeek in #16906
• [23.1] Provide error message instead of internal server error by @mvdbeek in #16905
• [23.1] Fix missing grep input in sort1 tool by @mvdbeek in #16910
• [23.1] Improve invocation error reporting by @mvdbeek in #16917
• [23.1] Fix library import from path linking files by @davelopez in #16919
• [23.1] Test link data with extended metadata by @mvdbeek in #16921
• [23.1] Skip change_datatype things if we're not actually changing the extension by @mvdbeek in #16931
• [23.1] Skip state filtering in __MERGE_COLLECTION__ tool by @mvdbeek in #16937
• [23.1] Add execute back to published workflows list by @dannon in #16934
• [23.1] Include owner's annotation when exporting workflow by @dannon in #16930
• [23.1] Fix discarded dataset ordering in Storage Dashboard by @davelopez in #16929
• [23.1] Backport Fix select parameter doesn't show parameter name in UI by @mvdbeek in #16943
• [23.1] Adds biii as supported xref reference type by @kostrykin in #16952
• [23.1] Prevent Singular external auth users from disconnecting identity by @ahmedhamidawan in #16961
• [23.1] Workaround issue in Routes by @nsoranzo in #16981
• [23.1] Backport Fix maf_thread_for_species.py by @mvdbeek in #16989
• [23.1] Empty page render fix - backport by @dannon in #16992
• [23.1] Client publication by @dannon in #16999
• [23.1] Don't store job in JobIO instance attributes by @mvdbeek in #16965
• [23.1] Fix copying metadata to copied job outputs by @mvdbeek in #17007
• [23.1] Update tar_to_directory dependency by @mvdbeek in #17009
• [23.0] Upgrade minimum conda to be compatible with latest conda-build by @bernt-matthias in #17013
• [23.1] Change log level for duplicate data table entries to warning by @mvdbeek in #16988
• [23.1] Fix duplicated tools in tool panel view section copying by @jmchilton in #17036
• [23.1] Fix filtering of active broadcasts for admins by @davelopez in #17049
• [23.1] Prevent workflow submission with missing input values by @mvdbeek in #17048
• [23.0] Fix extra files collection if using store_by="id" and outputs_to_working_directory by @mvdbeek in #17067
• [23.1] Remove rollback from __check_jobs_at_startup by @mvdbeek in #17085
• [23.1] Assert that DatasetCollectioElement has an associated object by @mvdbeek in #17071
• [23.1] Fix input dates in notifications: consider timezone offset by @davelopez in #17088
• [23.1] Add HEAD route to job_files endpoint by @mvdbeek in #17072
• [23.1] Add support for larch datatypes by @patrick-austin in #17080
• [23.1] Allow relative URLs in broadcasts action links by @davelopez in #17093
• [23.1] Implement missing upload for S3 file sources by @davelopez in #17100
• [23.1] Fix web_apps dependencies by @mvdbeek in #17099
• [23.1] Ensure that plugin build hash actually has a git hash to compare with… by @dannon in #17104
• [23.1] Set correct tool_path for packaged galaxy by @mvdbeek in #17102

New Contributors

• @kostrykin made their first contribution in #16952

Full Changelog: v23.1.1...v23.1.2