galaxyproject/galaxy v23.0.1

23.0.1

on GitHub

A note about this release

This is the first Galaxy point release for which all Python packages are published to the Python Package Index.
Changes listed here and in the package changelog only include changes made since the v23.0 tag was published and do not include changes made in between the v22.5 and v23.0.1 tags. We will include all changes for future releases going forward and we strive for more frequent point releases.

What's Changed

• [23.0] Fix Toast variant color for errors by @davelopez in #15928
• [23.0] Fix defineProps warning in client build. by @dannon in #15930
• [22.05] Fix mixed outputs_to_working_directory pulsar destinations by @mvdbeek in #15927
• [23.0] Prevent anonymous access to Storage Dashboard by @davelopez in #15934
• [23.0] Update Gravity to 1.0.3 by @natefoo in #15939
• [23.0] Add ca_certs option for sentry client by @mvdbeek in #15943
• [23.0] Fix History Import Bugs by @ahmedhamidawan in #15923
• [23.0] Fix folder listing via file browser by @mvdbeek in #15950
• [23.0] Change default watchdog inotify_buffer log level to info by @mvdbeek in #15967
• [23.0] Fix RO-crate invocation export with complex collections by @davelopez in #15971
• [23.0] Fix Webhooks not rendering by @ElectronicBlueberry in #15985
• [23.0] Fix invalid link to "workflows by owner" by @ElectronicBlueberry in #15986
• [23.0] Fix History filters includes related filter bug by @ahmedhamidawan in #15975
• [23.0] Fix history export papercuts by @davelopez in #15991
• [23.0] Fix build collection not resetting selection by @davelopez in #16005
• [23.0] Backport Improve display chunk generation for BAMs by @mvdbeek in #16007
• [23.0] Allow setting auto_decompress property in staging interface by @mvdbeek in #16014
• [23.0] Clarify search behavior in placeholder text in Published Histories by @davelopez in #16006
• [23.0] Make Expression Tools searchable in ToolBoxWorkflow by @ahmedhamidawan in #16022
• [23.0] Reports app fixes by @dannon in #16015
• [23.0] Workflow connections performance with SVG by @ElectronicBlueberry in #16000
• [23.0] Tabular Dataset Display Fixes by @dannon in #15970
• [23.0] Backport #16023: Fix pasting file fails if text starts with file by @mvdbeek in #16024
• [23.0] Ensure history export contains all expected datasets by @davelopez in #16013
• [23.0] Add support for launching workflows via Tutorial Mode by @hexylena in #15684
• [23.0] Fix gcsfs test discovery by @mvdbeek in #16039
• [23.0] Install node from setup-node action in more tests by @mvdbeek in #16043
• [23.0] Replace httpbin service with pytest-httpserver by @mvdbeek in #16042
• [23.0] Fix case sensitive filtering by name in histories by @davelopez in #16036
• [23.0] Various fixes to path prefix handling by @mvdbeek in #16033
• [23.0] Update pulsar to 0.15.2 by @mvdbeek in #16050
• [23.0] Fix minor error in WorkflowList help modal by @ahmedhamidawan in #16057
• [23.0] Backport fix pop-up link by @davelopez in #16060
• [22.05] Fix assertion linting to not fail on byte suffixes by @bernt-matthias in #15873
• [23.0] Anonymous User tool link bug fix by @ahmedhamidawan in #16065
• [23.0] Display DCE in job parameter component, allow rerunning with DCE input by @mvdbeek in #15744
• [23.0] merge 22.05 by @martenson in #16073
• [23.0] Fix BCO export by updating gxformat2 by @mvdbeek in #16081
• [23.0] Add missing dates for versions that contain changelog entries by @mvdbeek in #16090
• [23.0] Fix job failure handling when condor indicates job failure by @mvdbeek in #16096
• [23.0] Fix mypy error due to alembic 1.11.0 by @nsoranzo in #16104
• [23.0] Fix dataype_change not updating HDCA update_time by @mvdbeek in #16099
• [23.0] Don't build Docker image when pushing to release branches by @ksuderman in #16055
• [23.0] Fix extended metadata file size handling by @mvdbeek in #16109
• [23.0] Ignore invalid query params in display_by_username_and_slug by @mvdbeek in #16117
• [23.0] Extract HDA for code_file validate_input hook by @mvdbeek in #16120
• [23.0] Backport Improve robustness and abstractions used by collection edit tests. by @mvdbeek in #16116
• [23.0] Fix sort error when re-running job with DCE collection input by @mvdbeek in #16126
• [23.0] Fix rank calculation for jobs waiting to be run by anonymous users by @jdavcs in #16137
• [23.0] Fix backbone-based data selector to materialize consistent attribute set by @guerler in #15981
• [23.0] Fix related-hid in bulk contents API by @mvdbeek in #16128
• [23.0] Fix implicit converters with optional parameters by @mvdbeek in #16133
• [22.05] Fix get_test_from_anaconda() and base_image_for_targets() functions by @nsoranzo in #16125
• [23.0] Make ctx_rev optional in InstalledToolShedRepository response model by @dannon in #16139
• [23.0] Add script for creating (point) releases by @mvdbeek in #16076
• [23.0] Converge release process auth discovery. by @jmchilton in #16160
• [23.0] Show bug error for failed_meta state by @dannon in #16165
• [23.0] Fix test search for mulled container hashes by @mvdbeek in #16170
• [23.0] Tool filtering fix for label handling by @dannon in #16168
• [23.0] Fix optional fields being validated as missing in ts api by @jmchilton in #16141
• [23.0] Tool warnings can either be None or a Dictionary but not a String by @guerler in #16183
• [23.0] Startup fix when tool removed between reboot by @mvdbeek in #16175
• [23.0] Make point release script compatible with docutils 0.16 by @mvdbeek in #16190
• [23.0] Support ro crate 0.8.0 and 0.7.0 by @mvdbeek in #16193
• [23.0] Assert that local branches are up to date in release point script by @mvdbeek in #16195
• [23.0] Pin minimum tpv version by @mvdbeek in #16201
• [23.0] Verify existence of default value attribute for user forms fields by @guerler in #16205

Full Changelog: v23.0...v23.0.1