dnanexus/dxCompiler 2.9.0 on GitHub

2.9.0 2022-02-08

Command file is now echoed to stderr rather than stdout
Fixes a bug where directory support was broken for WDL; directories in WDL are represented as strings
Switches from using cwltool to cwlpack
Fix an issue with default values in CWL
Adds support for publishing global workflows from dxCompiler-generated WDL workflows; see documentation
Fix an error message detecting unsupported CWL version
Update sbt to 1.6.1

Breaking
- Parser API has changed substantially, with parameters added, removed, and rearranged
- Parser.parse method is now private - use parseString or parseFile instead
- Removes all options to modify IDs during parsing
Handles workflows packed by cwlpack
Adds Process.simpleName method to return simplified process name from ID automatically generated by cwlpack --add-ids
Adds Identifiable.copySimplifyIds method to deep-copy objects with simplified IDs
Adds CwlEnum.symbolNames function for getting enum symbols without any namespace prefixes
Adds coerce option to Evaluator.evaluate to actually perform type coercion, rather than just checking that the result is coercible to the specified type
Trims StringValue when coercing to primitive types
Fixes Evaluator.finalizeInputValue for compound and optional types
Evaluator.finalizeInputValue loads file contents from remote file source if file does not exist locally
CwlType.coerceTo now returns both the coerced-to type and value
Added CwlType.CwlGenericRecord, which is coercible to either CwlInputRecord or CwlOutputRecord
Fixes evaluation of values with multiple possible types