dnanexus/dxCompiler 2.8.2

dxCompiler 2.8.2

on GitHub

• Fixes issue where task without runtime section succeeds even when command block results in a failure code
• Forwards command output to the job log rather than buffering it until after command completion
• Updates code to compile with JDK11
• Updates build environment to JDK11, Scala 2.13.7, and SBT 1.5.7

Dependency updates

dxCommon 0.11.0

• Adds SysUtils.runCommand, which exposes options for how to handle stdin/stdout/stderr.
• Adds Paths.BaseEvalPaths.isLocal attribute to differentiate local from remote paths.
• Breaking removes SysUtils.execScript. Use runCommand with the script path as the argument instead.
• Adds validation of path characters to FileUtils.getUriScheme

dxFileAccessProtocols 0.5.3

• Handles ResourceNotFoundException in DxFileSource.exists

wdlTools 0.17.6

• Fixes stderr() function - previously it was returning the file for stdout