dnanexus/dxCompiler 2.8.1

dxCompiler 2.8.1

on GitHub

• Excludes apps from bundledDepends
• Localizes files declared in WDL task private variables
• Respects runtime definition in native task stub
• Fixes archiving of executables - tags them as "dxCompilerArchived" rather than renaming them
• Fixes error when parsing a field name with multiple stage-* prefixes (specifically with stage number >= 10)
• Logs full output of command execution

Dependency updates

dxCommon 0.10.1

• Adds PosixPath class for working with POSIX-style paths
• Changes Paths to use PosixPath rather than java.nio.Path
• Prettifies truncated log messages

dxApi 0.13.0

• Adds DxApi.addTags method
• Fixes DxFindDataObjects when used with tags constraint
• Handles record results in DxFindDataObjects
• Adds systemRequirements to DxWorkflowStageDesc

dxFileAccessProtocols 0.5.2

• Uses PosixPath rather than java.nio.Path for manipulating remote paths