dnanexus/dxCompiler 2.5.0

dxCompiler 2.5.0

on GitHub

• Docker image dependencies that are DNAnexus platform files are included in applet's bundledDepends
• Adds -instanceTypeSelection compiler option to allow disabling compile-type instance type selection
• Adds -defaultInstanceType option
• Adds support for new London region, aws:eu-west-2-g
• Fixes -projectWideReuse
• Fixes evaluation of outputs when one declaration depends on another

Dependency updates

dxCommon 0.8.0

• Adds getTargetDir methods to LocalizationDisambiguator
• Fixes use of localizationDir together with force in SafeLocalizationDisambiguator
• Adds FileSource.resolveDirectory as a separate method from resolve

dxApi 0.10.0

• Removes price-based selection of instance types in favor of rank-based selection
• Fixes parsing of non-file-type default values that are reference-type links
• Fixes parsing of parameter defaults/suggestions/choices that are of type Hash

dxFileAccessProtocols 0.5.0

• Implements resolveDirectory method

wdlTools 0.17.0

• Breaking Change Eval.applyMap is changed to Eval.applyAll and takes a Vector rather than Map argument. This is done to ensure the expressions are evaluated in order in case there are dependencies between them.
• Fixes parsing of runtime.returnCodes