dnanexus/dxCompiler 2.4.2 on GitHub

-imports now works correctly - import statements can reference files that are relative to an import directory rather than the main document
Coercion from Object to Map is now allowed - this enables the result of read_json to be assigned to a variable of type Map
Strings with escape sequences are now processed correctly - to preserve escape sequences in a string, they need to be "double-escaped"
- For example, to pass a regular expression containing a tab character to the second argument of the sub function:
```
String s1 = "hello\tBob"
String s2 = sub(s1, "\\t", " ")
```
- Another common example is passing a read group to bwa mem. Whether the string is defined in WDL, in a JSON input file, or on the command line, it needs to be "double-escaped":
```
String rg = "@RG\\tID:${sample_name}\\tSM:${sample_name}\\tLB:${sample_name}\\tPL:ILLUMINA"

command <<<
bwa -R "~{rg}" ...
>>>
```
Fixes an issue where indentation is stripped out of some commands
The default reorg applet now polls the analysis until it is fully updated before proceeding. For custom reorg applets, see the updated code in the example.

Fixes an issue with nested scatters that reference private variables from outer scopes, e.g.

workflow wf {
  input {
    Array[String] samples
    Array[File] files
  } 
  scatter (i in range(length(samples))) {
    scatter (j in range(length(files))) {
      call mytask { 
        input: sample = samples[i], file = files[j]
      }
    }  
  }
}

dnanexus/dxCompiler 2.4.2 dxCompiler 2.4.2 on GitHub

dnanexus/dxCompiler 2.4.2
dxCompiler 2.4.2

on GitHub