- Adds
-useManifests
option to generate applets and workflows whose inputs and outputs are manifest files - Fixes issue with using both streaming and non-streaming file inputs in the same task
- Fixes issue with scatter as the first element of a workflow
- Updates to wdlTools 0.12.7, which provides compatibility for some non-complaint syntax allowed by Cromwell
- Fixes
-separateOutputs
for scatter jobs