Release notes
472a659 - xz, 2025-08-14 00:50:48 +0800 : add_56_autorefs
53a765c - Federico Gueli, 2025-08-21 19:05:47 +0200 : XFG.17.3 : added Orf9b:A82V as defining mutation
af43c1f - Cornelius Roemer, 2025-09-11 20:08:32 +0200 : Designate XFG.1.1 and NY.3.7
ac72bf3 - Cornelius Roemer, 2025-09-12 11:22:30 +0200 : Designate XFG.4.1.1, XFG.4.2, PQ.4.2-5
35fb00a - Cornelius Roemer, 2025-09-13 10:09:02 +0200 : Designate XGA, NY.20-25, PE.1s, PE.2/3, XEC.42/43
83a7cb4 - Cornelius Roemer, 2025-09-13 10:32:52 +0200 : Designate NW.1.2.4/5
beb55ad - Cornelius Roemer, 2025-09-13 15:24:57 +0200 : Fix NW.1.2.4 designations and lineage notes
bc0696e - Cornelius Roemer, 2025-09-13 17:16:35 +0200 : Designate some PQs and XFGs
e8b4e5c - Cornelius Roemer, 2025-09-14 07:30:42 +0200 : Designate QR.1/2 (LF.7.7.2.1/2)
3bc221e - Cornelius Roemer, 2025-09-14 07:45:20 +0200 : Designate PC.3.3/4
442db8e - Cornelius Roemer, 2025-09-14 08:07:33 +0200 : Analyze LF.7.11 and designate lineages LF.7.11.1-3 accordingly
36a5484 - Cornelius Roemer, 2025-09-14 08:38:44 +0200 : Designate some PLs and KP.7 (due to interesting insertion mutation in KP.7.1)
0267d25 - Cornelius Roemer, 2025-09-14 08:47:20 +0200 : Designate XFG.33
bd16d3d - Cornelius Roemer, 2025-09-14 08:49:54 +0200 : Designate XFG.6.2, donor of XGA with N:379 reversion
727adb5 - Cornelius Roemer, 2025-09-14 09:04:09 +0200 : Designate XFG.3.18 and XFG.14.3
818db2c - Cornelius Roemer, 2025-09-14 09:20:25 +0200 : Designate XGB (NW.1.7.4, QS.1) and donor lineages
6e11c13 - Cornelius Roemer, 2025-09-14 09:23:59 +0200 : Fix designation typo
a068250 - Cornelius Roemer, 2025-09-14 09:25:45 +0200 : Add XGB designations
8c0dd24 - Cornelius Roemer, 2025-09-14 09:40:11 +0200 : Designate QS.2 and XFG.9.3-5
4636d35 - Walde1nsamkeit, 2025-09-14 21:48:17 +0800 : Update lineage_notes.txt
3cf74c8 - Andrew Urquhart, 2025-09-16 13:22:38 -0500 : Correct NY.25 and XFG.14.3 lineage notes
c6638f3 - Angie Hinrichs, 2025-09-16 16:25:03 -0700 : Merge pull request #3051 from xz-keg/master
7b33463 - Walde1nsamkeit, 2025-09-21 03:18:45 +0800 : Update lineage_notes.txt
f79f6e0 - Walde1nsamkeit, 2025-09-21 03:20:37 +0800 : Merge pull request #9 from Walde1nsamkeit/patch-1
27b2662 - Walde1nsamkeit, 2025-09-21 03:36:10 +0800 : Update lineage_notes.txt
38cb63d - Walde1nsamkeit, 2025-09-21 22:44:14 +0800 : Update lineage_notes.txt
b9d9cfd - Angie Hinrichs, 2025-09-22 17:52:55 -0700 : Consistency check for lineages.csv and lineage_notes.txt
1000da0 - Angie Hinrichs, 2025-09-22 18:00:37 -0700 : Merge pull request #3094 from AngieHinrichs/check_lineages_notes
87aa735 - Cornelius Roemer, 2025-09-25 11:03:17 +0200 : Designate NW.1.2.6 and XFG.3.19-22
823250b - Cornelius Roemer, 2025-09-25 11:58:14 +0200 : Designate some MVs
6d8dabd - Cornelius Roemer, 2025-09-26 09:58:46 +0200 : Designate XEC.27.2.1/2
bbd6049 - Cornelius Roemer, 2025-09-27 09:14:56 +0200 : Add extra XGA designations
cb77404 - Cornelius Roemer, 2025-09-27 09:24:27 +0200 : Designate some XFJs
ad0e120 - Cornelius Roemer, 2025-09-27 09:28:06 +0200 : Designate XFJ.3.1
f2afa10 - Cornelius Roemer, 2025-09-27 12:00:37 +0200 : Designate XFG.5.2.1/2
ea891b7 - Cornelius Roemer, 2025-09-27 12:07:45 +0200 : Designate QTs (XFG.3.4.2)
22a67da - Federico Gueli, 2025-09-27 12:22:10 +0200 : Add deletion mutation to XFG.3.1 lineage notes
79d13e0 - Cornelius Roemer, 2025-09-27 12:54:16 +0200 : Designate some XFG.3.1s
07e7573 - Walde1nsamkeit, 2025-09-28 05:16:49 +0800 : Update lineage_notes.txt
e2917a0 - Cornelius Roemer, 2025-09-28 10:47:53 +0200 : Designate some XFG.6 and XFG.14.1
c7c0d4f - Cornelius Roemer, 2025-09-28 12:21:17 +0200 : Designate some NY.3s
c7ef3dc - Cornelius Roemer, 2025-09-28 12:27:49 +0200 : Designate PQ.35
24a1330 - Federico Gueli, 2025-09-28 14:50:18 +0200 : Fix typo in QT.1.2 alias description
c80dc54 - Walde1nsamkeit, 2025-09-29 04:45:26 +0800 : Update lineage_notes.txt
10e39c1 - Cornelius Roemer, 2025-10-01 14:26:14 +0200 : Remove erroneous "tree one = (" lines from lineages.csv
6190347 - Cornelius Roemer, 2025-10-01 14:32:11 +0200 : Add checks to prevent tree one lines in lineages.csv
9a6563c - Cornelius Roemer, 2025-10-01 14:35:27 +0200 : Add pre-commit check for lineages.csv and lineage_notes.txt sync
ef390aa - Cornelius Roemer, 2025-10-01 14:45:32 +0200 : Designate KS.1.4 (add designations - it's been in lineage notes for a long time)
67f3ab3 - Cornelius Roemer, 2025-10-01 14:50:01 +0200 : fix: Add LB.1.4.2 to lineages.csv
52abb75 - Cornelius Roemer, 2025-10-01 14:55:40 +0200 : fix: Add NC.2 designations
733d923 - Cornelius Roemer, 2025-10-01 14:57:51 +0200 : fix: Add NY.21 designations
3b133e0 - Cornelius Roemer, 2025-10-01 14:59:08 +0200 : fix: Add NY.3.3.1 designations
7094026 - Cornelius Roemer, 2025-10-01 15:00:55 +0200 : fix: Add XFG.3.1.6 designations
de13882 - Cornelius Roemer, 2025-10-01 15:02:04 +0200 : fix: Add XFG.5.1.1 designations
f1b693a - Cornelius Roemer, 2025-10-01 15:03:40 +0200 : Designate XFG.5.1.2
16bed0b - Cornelius Roemer, 2025-10-01 15:04:48 +0200 : fix: Add XFJ.5 designations
e0a2862 - Cornelius Roemer, 2025-10-01 15:05:33 +0200 : fix: Add XFJ.6 designations
0d727c0 - Cornelius Roemer, 2025-10-02 13:42:16 +0200 : Designate PQ.2.4.1/2
9cc955c - Cornelius Roemer, 2025-10-02 13:55:57 +0200 : Designate PQ.2.7/8(.1)
a5a7cba - Cornelius Roemer, 2025-10-02 14:01:54 +0200 : Designate XFG.3.1.7
edb8417 - Cornelius Roemer, 2025-10-02 14:08:59 +0200 : Designate PC.5 and QV.1/2
3f9175c - Cornelius Roemer, 2025-10-02 14:21:02 +0200 : Designate more XGAs
b9b7b0a - Cornelius Roemer, 2025-10-02 14:22:31 +0200 : Designate XFV.2
7cc0422 - Cornelius Roemer, 2025-10-02 14:29:06 +0200 : Designate PQ.2.5.1/2
7b8dee8 - Walde1nsamkeit, 2025-10-03 12:05:50 +0800 : Merge branch 'cov-lineages:master' into master
8233482 - Walde1nsamkeit, 2025-10-03 16:53:28 +0800 : Update lineage_notes.txt
7c73aa5 - Cornelius Roemer, 2025-10-03 12:31:08 +0200 : Designate some XFG.4s
a976f01 - Cornelius Roemer, 2025-10-03 12:36:30 +0200 : Designate some XFG.23.1s
3645f96 - Angie Hinrichs, 2025-10-03 11:41:12 -0700 : Merge pull request #3057 from FedeGueli/patch-74
afaa5ab - Angie Hinrichs, 2025-10-03 11:42:09 -0700 : Merge pull request #3061 from cov-lineages/dependabot/github_actions/actions/checkout-5
0bf7698 - Angie Hinrichs, 2025-10-03 11:55:17 -0700 : Merge pull request #3084 from alurqu/Correct-NY.25-and-XFG.14.3-lineage-notes
9db049b - Angie Hinrichs, 2025-10-03 11:55:59 -0700 : Merge pull request #3076 from cov-lineages/dependabot/github_actions/actions/setup-python-6
6677134 - Angie Hinrichs, 2025-10-03 13:10:30 -0700 : Merge pull request #3087 from Walde1nsamkeit/master
6f22a63 - Angie Hinrichs, 2025-10-03 13:11:58 -0700 : Merge pull request #3100 from FedeGueli/patch-76
073c1be - Angie Hinrichs, 2025-10-03 13:12:57 -0700 : Merge pull request #3101 from FedeGueli/patch-77
f8a4e9b - Cornelius Roemer, 2025-10-04 13:45:54 +0200 : Designate some PQs
8498dce - Cornelius Roemer, 2025-10-04 14:14:48 +0200 : PQ.4.6 doesn't have PQ.4 defining mutation, so it's PQ.37 instead
0fc9736 - Cornelius Roemer, 2025-10-05 13:12:23 +0200 : Broaden XFW.1 to not require S:T676P (which becomes XFW.1.1), add XFW.1.2 (S:Q677R)
cacf1c4 - Cornelius Roemer, 2025-10-05 13:21:31 +0200 : Designate XFG.3.18.1
376cf12 - Cornelius Roemer, 2025-10-05 13:34:43 +0200 : Designate XFG.3.4.5
415c20a - Cornelius Roemer, 2025-10-05 13:40:02 +0200 : Designate XFG.3.4.6-9
863e121 - Cornelius Roemer, 2025-10-05 14:44:56 +0200 : Designate some XFG.6s and XFG.9.4.1-2
f1b0dcd - Cornelius Roemer, 2025-10-06 13:15:29 +0200 : Designate XGC
8a14fdc - Cornelius Roemer, 2025-10-06 13:21:14 +0200 : Undo designation of XFW.1.2 as Dutch sequence has also got 676P
ce03f9c - Cornelius Roemer, 2025-10-07 14:21:50 +0200 : Designate XFG.6s
df4cd04 - Cornelius Roemer, 2025-10-07 14:26:38 +0200 : Designate XEC.18.1.1
88fab5b - Cornelius Roemer, 2025-10-07 14:32:15 +0200 : Designate XFG.3.16.1
5990295 - Cornelius Roemer, 2025-10-07 14:47:24 +0200 : Designate QT.3
3c04447 - Cornelius Roemer, 2025-10-10 08:05:20 +0200 : Designate some XFGs
045f963 - Cornelius Roemer, 2025-10-10 08:07:24 +0200 : Designate XFG.34
c1eaf8a - Cornelius Roemer, 2025-10-10 08:23:31 +0200 : Designate some XFG.5.2s
f9454d3 - Cornelius Roemer, 2025-10-10 08:27:07 +0200 : Designate QQ.1 (XFG.17.2.1.1)
dd6a10e - Cornelius Roemer, 2025-10-10 09:01:14 +0200 : Designate PQ.2.9, some XFC.3sand XFG.14s
438fd4c - Cornelius Roemer, 2025-10-10 09:03:56 +0200 : Designate XFG.22.3
2e805ff - Cornelius Roemer, 2025-10-10 09:11:29 +0200 : Designate some XFG.8
ec3dfd2 - Cornelius Roemer, 2025-10-11 11:22:50 +0200 : Designate XFG.5.4(.1) and QW.1
9bc6a23 - Cornelius Roemer, 2025-10-11 11:25:21 +0200 : Designate XFG.5.1.3/4
a7afc4e - Cornelius Roemer, 2025-10-11 11:40:46 +0200 : Designate XFG.3.25
d1dc177 - Cornelius Roemer, 2025-10-11 11:43:37 +0200 : Designate XFG.5.1.5 (S:L44I)
fc59e0f - Cornelius Roemer, 2025-10-11 12:29:55 +0200 : Designate some more lineages
5b41d1d - Cornelius Roemer, 2025-10-12 09:32:21 +0200 : Designate some XFG.8s
48cd72e - Cornelius Roemer, 2025-10-12 09:48:06 +0200 : Designate XFG.3.27s
ce8d9d1 - Cornelius Roemer, 2025-10-12 10:01:14 +0200 : Designate PL.6 and LF.7.1.15
3a8c09d - Cornelius Roemer, 2025-10-12 12:29:06 +0200 : Fix XFG.3.27 to include A1588G, remove XFG.3.27.3 as a result
2079491 - Cornelius Roemer, 2025-10-12 13:11:17 +0200 : Designate QY.1, XFG.4.1.5
aaf5a1c - Federico Gueli, 2025-10-12 14:25:36 +0200 : Correcting a typo on QQ.1 ALias
c10aa1f - Federico Gueli, 2025-10-12 14:29:33 +0200 : Fix typo in lineage_notes.txt for XFG.5.1.5
44b9876 - Federico Gueli, 2025-10-12 18:21:31 +0200 : Update mutation details for lineage QY.1
771dff3 - Cornelius Roemer, 2025-10-13 11:16:58 +0200 : Designate NY.26 and sublineages including NY.26.1 (S:L441V)
e4e043e - Cornelius Roemer, 2025-10-13 11:23:56 +0200 : Designate PD.1.2.1
a50a225 - Angie Hinrichs, 2025-10-14 10:12:28 -0700 : Merge pull request #3109 from cov-lineages/dependabot/github_actions/actions/checkout-5
d016aa9 - Angie Hinrichs, 2025-10-14 10:13:00 -0700 : Merge pull request #3113 from FedeGueli/patch-78
325ca99 - Angie Hinrichs, 2025-10-14 10:13:46 -0700 : Merge pull request #3114 from FedeGueli/patch-79
7bf8002 - Angie Hinrichs, 2025-10-14 10:14:12 -0700 : Merge pull request #3115 from FedeGueli/patch-80
15e0e46 - xz, 2025-10-15 17:12:06 +0800 : a
2d51313 - Angie Hinrichs, 2025-10-15 10:48:54 -0700 : Merge pull request #3117 from xz-keg/master
6148ff6 - Cornelius Roemer, 2025-10-27 08:06:56 +0100 : Designate XFN.2.1 and XFJ.1.3
02d2cb6 - Cornelius Roemer, 2025-10-27 08:15:09 +0100 : Designate XFJ.3.1.1 (S:K679N rev)
ac2945c - Cornelius Roemer, 2025-10-27 08:18:30 +0100 : Designate XFJ.3.1.2
06a709d - Cornelius Roemer, 2025-10-27 08:36:44 +0100 : Designate XFJ.3.2
3627aaa - Cornelius Roemer, 2025-10-27 09:21:33 +0100 : Designate QF.1.1(.1)/-QF.5, XFG.9.3.1/2
95c3e35 - Cornelius Roemer, 2025-10-27 09:31:52 +0100 : Designate XFG.3.28
1793e62 - Federico Gueli, 2025-10-27 11:49:38 +0100 : Add Orf9b:S10F mutation to XFN.2.1
afc9685 - Angie Hinrichs, 2025-10-27 11:48:00 -0700 : Merge pull request #3132 from FedeGueli/patch-81
4836745 - Angie Hinrichs, 2025-10-27 11:49:05 -0700 : Merge pull request #3131 from cov-lineages/dependabot/github_actions/actions/upload-artifact-5
94aba12 - Angie Hinrichs, 2025-10-27 11:49:54 -0700 : Merge pull request #3130 from cov-lineages/dependabot/github_actions/actions/download-artifact-6.0.0
77646da - Walde1nsamkeit, 2025-10-31 04:15:02 +0800 : Update lineage_notes.txt
0cf16c1 - Walde1nsamkeit, 2025-10-31 04:16:23 +0800 : Update alias_key.json
76ec039 - Cornelius Roemer, 2025-11-01 11:57:21 +0100 : Designate XFG.3.7.1
b14c43c - Cornelius Roemer, 2025-11-01 12:02:01 +0100 : Extra XFG.3.7.1
3e7e72c - Cornelius Roemer, 2025-11-01 12:41:29 +0100 : Designate QF.5.1, QF.6 and XFG.3.29
b9ec8f8 - Walde1nsamkeit, 2025-11-02 02:13:55 +0800 : Update lineage_notes.txt
4d6f7e4 - Walde1nsamkeit, 2025-11-02 02:14:28 +0800 : Update alias_key.json
864604f - Cornelius Roemer, 2025-11-04 10:39:41 +0100 : Designate XFG.3.30(.1/2) and XFG.4.5
1458425 - Angie Hinrichs, 2025-11-04 15:05:21 -0800 : Merge pull request #3134 from Walde1nsamkeit/patch-2
716ca5e - Walde1nsamkeit, 2025-11-07 00:15:49 +0800 : Update lineage_notes.txt
d9ec4eb - Angie Hinrichs, 2025-11-07 09:48:10 -0800 : Merge pull request #3136 from Walde1nsamkeit/patch-3