Release notes
52f144e - Cornelius Roemer, 2025-06-12 09:54:10 +0200 : Designate some PE.1s
2319a7b - Cornelius Roemer, 2025-06-12 10:04:58 +0200 : Designate XEC.27s, MC.10.2s, NY.16.2
a4a05c1 - Cornelius Roemer, 2025-06-12 10:21:38 +0200 : Fix mistake
efc6f98 - Cornelius Roemer, 2025-06-12 10:30:26 +0200 : Fix NY.16.2 designations
1e5587e - Cornelius Roemer, 2025-06-12 11:46:54 +0200 : Designate some MC and XECs
c011163 - Cornelius Roemer, 2025-06-13 12:09:46 +0200 : Fix 2 bugs: Missing XEC.2.7 lineage notes and PZ.1 designations
34ad35c - Cornelius Roemer, 2025-06-13 12:25:26 +0200 : Designate some LF.7.1.3 sublineages (QAs)
fa50fd8 - Cornelius Roemer, 2025-06-13 12:32:06 +0200 : Designate some LF.7.1.2s (NT)
3f45c3f - Cornelius Roemer, 2025-06-13 12:42:31 +0200 : Designate some LF.7.1s, note QB.1 is currently placed in NT but that's likely 475V homoplasy
59c9e07 - Cornelius Roemer, 2025-06-14 15:07:19 +0200 : Designate XFP.1 (S:N477D)
f8b620b - Cornelius Roemer, 2025-06-14 16:03:53 +0200 : Designate XFG.4-6
797bda2 - Cornelius Roemer, 2025-06-14 16:09:51 +0200 : Designate NY.18(.1)
e5f3cdd - Cornelius Roemer, 2025-06-14 16:40:19 +0200 : Remove low quality XFP sequences from lineages.csv
7af14cc - Cornelius Roemer, 2025-06-15 10:59:59 +0200 : Designate some XDYs
efc813a - Cornelius Roemer, 2025-06-16 15:22:28 +0200 : Designate XFG.7
edb5858 - Cornelius Roemer, 2025-06-16 15:43:36 +0200 : Add some XFP designations
d5c3b0d - Cornelius Roemer, 2025-06-16 15:53:24 +0200 : Designate PY.1.1
5fdb71f - Federico Gueli, 2025-06-16 18:36:49 +0200 : XFG.7 corrections
d79635a - Cornelius Roemer, 2025-06-17 16:01:07 +0200 : Designate QC.1/2. @AngieHinrichs note the G15007A is possibly an artefact of a certain French lab, might want to apply branch specific masking to clean up
939d480 - Cornelius Roemer, 2025-06-17 16:08:18 +0200 : Designate QC.3/4
81cde6c - Cornelius Roemer, 2025-06-19 15:38:50 +0200 : Designate QC.5
5ad7ae3 - Cornelius Roemer, 2025-06-28 16:59:57 +0200 : Designate some PQs with I478T reversion
00bffb5 - Cornelius Roemer, 2025-07-02 13:42:56 +0200 : Designate PY.4.1 and add extra BA.3.2* designations
2d05772 - Cornelius Roemer, 2025-07-02 13:50:48 +0200 : Designate PY.1.1.1 (S:A435S)
9501d4d - Cornelius Roemer, 2025-07-03 01:59:44 +0200 : Designate PY.1.2-PY.1.4.1
2888b17 - Walde1nsamkeit, 2025-07-03 17:13:54 +0800 : Update lineage_notes.txt
01ba0c9 - Walde1nsamkeit, 2025-07-03 17:19:04 +0800 : Update lineage_notes.txt
0b32d50 - Angie Hinrichs, 2025-07-03 17:17:38 -0700 : Merge pull request #3002 from FedeGueli/patch-71
4cf71b1 - Angie Hinrichs, 2025-07-03 17:19:30 -0700 : Merge pull request #3014 from Walde1nsamkeit/patch-21
80ceb5a - xz, 2025-07-04 11:51:08 +0800 : a
2241690 - Angie Hinrichs, 2025-07-07 12:10:18 -0700 : Merge pull request #3015 from xz-keg/master
8e24e1d - Cornelius Roemer, 2025-07-08 15:40:50 +0200 : Designate XFP.1.1 and XFP.2
038c4ad - Cornelius Roemer, 2025-07-08 15:47:13 +0200 : Designate XFG.8/9/10
237d375 - Cornelius Roemer, 2025-07-08 16:45:47 +0200 : Designate XFQ
b647438 - Cornelius Roemer, 2025-07-08 17:07:09 +0200 : Designate some XFG sublineages
3c60588 - Cornelius Roemer, 2025-07-08 17:12:45 +0200 : Designate XFG.14 (S:K529T, S:V1264L, ORF1a:Q998H, ORF1a:H2092Y)
c7fcdfc - Cornelius Roemer, 2025-07-08 17:48:55 +0200 : Remove low quality Bangladesh XFQ for now
f24410c - Cornelius Roemer, 2025-07-14 12:28:34 +0200 : Designate some PQ and fix missing XFQ alias json entry
6a2f137 - Cornelius Roemer, 2025-07-14 13:04:34 +0200 : Designate some PQs and LF.7.11
effc5bc - Cornelius Roemer, 2025-07-14 13:11:47 +0200 : Designate PQ.24
f2fdbd6 - Cornelius Roemer, 2025-07-14 13:16:48 +0200 : Designate XFG.4.1
80f6daf - Cornelius Roemer, 2025-07-14 13:26:39 +0200 : Designate QD.1
03c7620 - Walde1nsamkeit, 2025-07-15 18:48:20 +0800 : Update lineage_notes.txt
093966b - Cornelius Roemer, 2025-07-18 14:35:26 +0200 : Designate XFG.9.1 (S:A845S)
fa43b3d - Cornelius Roemer, 2025-07-18 14:45:55 +0200 : Designate some XFCs
6788e66 - Cornelius Roemer, 2025-07-18 14:59:09 +0200 : Designate some LF.7.9 and NY.1 and MC.18s
aa66ddb - Cornelius Roemer, 2025-07-18 15:02:11 +0200 : Designate LP.8.1.16 and QE.1 (688V)
ab1639f - Cornelius Roemer, 2025-07-18 22:59:08 +0200 : Designate QF.1 (XFG.3.4.1.1, S:L244S)
05672f9 - Cornelius Roemer, 2025-07-18 23:28:33 +0200 : Designate a bunch of NY.3s and PQ.25 (S:I1114T)
85d2196 - Cornelius Roemer, 2025-07-19 17:19:41 +0200 : Designate NY.19 (T572I)
23d6745 - Cornelius Roemer, 2025-07-21 18:31:23 +0200 : Designate some XFGs
d6f9458 - Cornelius Roemer, 2025-07-22 13:23:05 +0200 : Designate PW.3 and add extra LF.7.10.1 designations
4a4238c - Cornelius Roemer, 2025-07-22 13:30:09 +0200 : Designate LF.7.10.2 ( S:K478T) and PL.3 (S:L335F, S:K478T (rev))
fde4b21 - Cornelius Roemer, 2025-07-22 13:34:41 +0200 : Designatet PP.1.1 and PP.1.1.1
7a04b1e - Cornelius Roemer, 2025-07-22 13:49:02 +0200 : Designate some NW.1s and NW.3(.1)
e21eefc - Cornelius Roemer, 2025-07-22 14:00:12 +0200 : Designate XES sublineages and some XFC.1s
d591716 - Federico Gueli, 2025-07-22 16:41:54 +0200 : Correction of a typo of XFC.1.6 defining mutation
fd90607 - Federico Gueli, 2025-07-22 17:33:39 +0200 : NW.1.7 defining change to AA (Orf9b)
125a442 - Cornelius Roemer, 2025-07-24 11:24:21 +0200 : Designate XFN.1/2
e4a896a - Walde1nsamkeit, 2025-07-25 02:18:19 +0800 : Update lineage_notes.txt
ea44dde - Walde1nsamkeit, 2025-07-25 02:20:53 +0800 : Merge branch 'patch-23' into patch-22
0ec9b60 - Walde1nsamkeit, 2025-07-25 02:21:20 +0800 : Merge pull request #4 from Walde1nsamkeit/patch-22
3db00a5 - Cornelius Roemer, 2025-07-25 13:53:14 +0200 : Designate PG.3.1
4e5bbde - Cornelius Roemer, 2025-07-25 14:03:31 +0200 : Designate some XFGs
018773d - Walde1nsamkeit, 2025-07-26 11:14:11 +0800 : Update lineage_notes.txt
8f12dd9 - Walde1nsamkeit, 2025-07-26 11:41:01 +0800 : Merge pull request #5 from FedeGueli/patch-72
4bfee8f - Walde1nsamkeit, 2025-07-26 11:41:27 +0800 : Merge pull request #6 from FedeGueli/patch-73
893fbbf - Walde1nsamkeit, 2025-07-26 11:45:19 +0800 : Update lineage_notes.txt
469839c - Walde1nsamkeit, 2025-07-26 11:46:40 +0800 : Merge pull request #7 from cov-lineages/master
6d90060 - Walde1nsamkeit, 2025-07-26 11:48:35 +0800 : Update lineage_notes.txt
8f0c7b8 - Walde1nsamkeit, 2025-07-26 11:57:07 +0800 : Update lineage_notes.txt
016b6f0 - Walde1nsamkeit, 2025-07-26 16:01:30 +0800 : Update lineage_notes.txt
ff11df9 - Cornelius Roemer, 2025-07-28 13:17:33 +0200 : Withdraw XFG.20 as it was a dropout branch of XFG.3, my bad, FYI @AngieHinrichs
3095339 - Cornelius Roemer, 2025-07-28 13:46:56 +0200 : Designate LF.7.12(.1)
a3da652 - Cornelius Roemer, 2025-07-29 09:06:35 +0200 : Designate PQ.26, PQ.4.1, PQ.5.1
bada3ad - Cornelius Roemer, 2025-07-29 09:12:16 +0200 : Designate PQ.5.1.1/2 and PQ.27
9317ff0 - Cornelius Roemer, 2025-07-29 09:13:19 +0200 : Designate PQ.28
cb43003 - Cornelius Roemer, 2025-07-29 09:24:22 +0200 : Designate XFG.3.5-7
b8fdb4c - Cornelius Roemer, 2025-07-29 11:36:53 +0200 : Designate XFG.3.1.1-3
1976d31 - Cornelius Roemer, 2025-07-29 12:26:15 +0200 : Designate NL.5.2.1, NL.23, LB.1.7.4, LB.1.11(.1/2), XFR (LF.7.3-LB.1.11.1)
ce4443d - Cornelius Roemer, 2025-07-29 12:53:36 +0200 : Designate XFS Recombinant lineage of LF.7.1, LP.8.1.9 (breakpoint 22108-22892)
033f996 - Cornelius Roemer, 2025-07-29 15:20:34 +0200 : Designate XFT, QH.1, QG.1
18db4b9 - Cornelius Roemer, 2025-07-29 15:31:36 +0200 : Designate XFU
ab84045 - Cornelius Roemer, 2025-07-29 15:40:42 +0200 : Designate some more QCs
4cbf23f - Cornelius Roemer, 2025-07-29 15:46:30 +0200 : Designate LF.7.6.3-5
33cec74 - Cornelius Roemer, 2025-07-29 16:52:09 +0200 : Desingaet LF.7.1.14
ba53c09 - Cornelius Roemer, 2025-07-29 16:56:33 +0200 : Designate XFG.3.3.1 and XFV
1774e1e - Cornelius Roemer, 2025-07-29 17:11:37 +0200 : Designate QJ.1/2 (LF.7.1.6.1/2)
5553707 - Walde1nsamkeit, 2025-08-01 09:15:18 +0800 : Update lineage_notes.txt
bf00fc5 - Walde1nsamkeit, 2025-08-01 09:17:55 +0800 : Merge branch 'patch-24' into patch-23
86bb22a - Walde1nsamkeit, 2025-08-01 09:18:03 +0800 : Merge pull request #8 from Walde1nsamkeit/patch-23
ec0634f - Cornelius Roemer, 2025-08-02 10:28:27 +0200 : Designate some XFGs
21113eb - Cornelius Roemer, 2025-08-02 10:47:04 +0200 : Designate some MCs
88dec25 - Cornelius Roemer, 2025-08-03 21:54:43 +0200 : Designate XFG.18.1 and XFG.23(.1)
02d52b0 - Cornelius Roemer, 2025-08-03 22:16:41 +0200 : Designate PQ.2.3/4/5
1a3c36f - Walde1nsamkeit, 2025-08-05 03:23:02 +0800 : Update lineage_notes.txt
e123126 - Angie Hinrichs, 2025-08-04 14:56:38 -0700 : Merge pull request #3041 from Walde1nsamkeit/patch-24
4a7eeb5 - Cornelius Roemer, 2025-08-17 12:01:00 +0100 : Designate XFG.3.4.4 (S:V367I, N:A152S, ORF1b:A520T)
4cc6cec - Cornelius Roemer, 2025-08-17 12:09:49 +0100 : Designate XFG.3.8(.1)
77d30da - Cornelius Roemer, 2025-08-17 12:14:13 +0100 : Designate NY.15.1/2
17d41bd - Cornelius Roemer, 2025-08-17 13:05:07 +0100 : Designate PQ.9.1.1 (S:R681H, S:F939L)
079b83d - Cornelius Roemer, 2025-08-17 13:14:16 +0100 : Designate XFG.2.3(.1)
804f9ad - Cornelius Roemer, 2025-08-17 13:20:39 +0100 : Designate QL.1(.1) [NB.1.6.1 alias]
90bc8b4 - Cornelius Roemer, 2025-08-17 13:26:39 +0100 : Designate NW.1.2.1-3
3462d80 - Cornelius Roemer, 2025-08-17 13:30:40 +0100 : Designate some more PY.1s
598bb4d - Cornelius Roemer, 2025-08-17 13:47:00 +0100 : Designate some NY.13s
1e7974c - Cornelius Roemer, 2025-08-17 14:03:17 +0100 : Designate XFG.24-25
4e874bc - Cornelius Roemer, 2025-08-18 15:12:53 +0200 : Fix QL to be under NB.1.1 (due to 6583), designate a bunch of NB.1s with H445P
4ce6a15 - Cornelius Roemer, 2025-08-20 14:06:36 +0200 : Designate XFW and XFW.1
8560684 - Cornelius Roemer, 2025-08-20 15:33:32 +0200 : Designate XDY.3.1-3
18a535d - Cornelius Roemer, 2025-08-20 15:39:14 +0200 : Designate XFG.17.1-3
0656a8c - Cornelius Roemer, 2025-08-20 19:26:45 +0200 : Designate LF.7.2.2 and XFG.3.9-12
3af3308 - Cornelius Roemer, 2025-08-22 14:36:19 +0200 : Designate some PQ, XFG, XFV, XFJ
0959ce9 - Cornelius Roemer, 2025-08-22 14:45:07 +0200 : Designate forgotten NY.13.3
7f89072 - Cornelius Roemer, 2025-08-24 14:47:56 +0200 : Add PQ.30 designations (sorry @AngieHinrichs)
5ec0675 - Cornelius Roemer, 2025-08-24 14:57:05 +0200 : Designate XFY
2c54555 - Cornelius Roemer, 2025-08-24 15:07:55 +0200 : Designate XFZ and PG.3.2
b7fed15 - Cornelius Roemer, 2025-08-24 15:33:38 +0200 : Add to notes which XFG.3 have A28877T, G28878C
d390ec9 - Cornelius Roemer, 2025-08-26 11:35:03 +0200 : Designate some XFGs
53fd339 - Cornelius Roemer, 2025-08-26 11:54:46 +0200 : XFG.27 is actually sublineage of XFG.10 -> make it XFG.10.1
2953f9e - Cornelius Roemer, 2025-08-26 12:01:32 +0200 : Add missing XFG.3.15 designations, fix XFG.3.16
04085cf - Cornelius Roemer, 2025-08-26 15:22:51 +0200 : Fix XFG.25 description, thanks @xz-keg
cad3309 - Cornelius Roemer, 2025-08-27 16:56:02 +0200 : Designate LH.3
c19e2b3 - Cornelius Roemer, 2025-08-30 16:36:36 +0200 : Additional XFY designations
f4ef56c - Cornelius Roemer, 2025-08-30 16:38:53 +0200 : Designate XFG.3.5.2
0ddf715 - Cornelius Roemer, 2025-08-30 16:43:48 +0200 : Designate XFG.22.1
866ae6d - Cornelius Roemer, 2025-09-04 12:51:16 +0200 : Designate XFG.17.4
99bd640 - Cornelius Roemer, 2025-09-06 18:55:18 +0200 : Designate XFT.1 (S:A475V) and extra XFT
b12f26d - Cornelius Roemer, 2025-09-06 19:08:22 +0200 : Designate XFG.3.1.5 and XFG.7.1.1
c4f20c9 - Cornelius Roemer, 2025-09-06 19:19:59 +0200 : Designate PG.6.1 (S:R346T, S:S446N)
452736b - Cornelius Roemer, 2025-09-06 19:36:35 +0200 : Correction: QL.1.1 -> NB.1.1.1, QL.1.1 -> QL.1, see #3058
b468308 - Cornelius Roemer, 2025-09-07 10:52:52 +0200 : Designate PQ.17.1 (C7834T, C29708T)
0e4f96e - Cornelius Roemer, 2025-09-07 11:07:30 +0200 : Designate PQ.1.5, PQ.1.6, PQ.1.6.1, PQ.17.2
a5198c2 - Cornelius Roemer, 2025-09-07 11:32:59 +0200 : Add missing PQ.17.2 designations
419bb68 - Cornelius Roemer, 2025-09-07 15:28:11 +0200 : Add PQ.2.5 designations to lineages.csv
fe6e6c8 - Cornelius Roemer, 2025-09-07 15:31:16 +0200 : Add .claude/ to .gitignore
477d3bf - Walde1nsamkeit, 2025-08-06 07:31:34 +0800 : Update lineage_notes.txt
44ce6cc - Cornelius Roemer, 2025-09-07 17:03:22 +0200 : Fix XFC.1.7 designations
3e19312 - Cornelius Roemer, 2025-09-07 17:12:29 +0200 : Designate NW.3.1 and NW.3.2
5c66b8d - Cornelius Roemer, 2025-09-09 05:11:47 +0200 : Narrow PG.6 to be S:R346T, S:S446N, G29706T, remove PG.6.1, per request from @AngieHinrichs in c4f20c9#commitcomment-165389275 due to Pangolin masking