github cov-lineages/pango-designation v1.30
pango designation v1.30

6 hours ago

Release notes

acce355 - Mydtlwn, 2024-07-28 00:49:47 +0800 : Fix KS.1.1_KS.1.3 alias
13ecbaf - Mydtlwn, 2024-07-28 01:06:58 +0800 : Fix MJ.1 Alias
81eb8b5 - Angie Hinrichs, 2024-07-30 13:51:27 -0700 : Merge pull request #2701 from Mydtlwn/master
0a53c75 - Erin Newcomer, 2024-07-31 12:47:31 -0500 : Update lineage_notes.txt L.4
7de29b2 - Angie Hinrichs, 2024-07-31 11:39:33 -0700 : Merge pull request #2706 from erinpnewcomer/patch-1
c8b9d2d - Cornelius Roemer, 2024-08-07 15:42:31 -0300 : Designate XEC (recombinant of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe, from #2717)
aac77b1 - Cornelius Roemer, 2024-08-07 15:57:09 -0300 : Designate KP.2.3.5 (S:K535T, A1087G)
4ee31e1 - Cornelius Roemer, 2024-08-07 15:58:25 -0300 : Designate KP.2.3.6 (S:T572I)
138717a - Cornelius Roemer, 2024-08-07 16:05:18 -0300 : Designate LP.1.2 (S:R190S, T18300A, USA), LP.4 (S:T572I, ORF8:A65V)
968a20b - Cornelius Roemer, 2024-08-07 16:10:54 -0300 : Designate LB.1.2.2 (S:T572I, C22075T)
b51c5b0 - Cornelius Roemer, 2024-08-07 16:12:25 -0300 : Designate LB.1.2.3 (S:F175L, ORF1a:I1568F)
01948c2 - Cornelius Roemer, 2024-08-07 16:27:34 -0300 : Designate KP.2.18 (S:T22N, on T22795G branch), KP.2.14.1 (S:T22N)
5543b21 - Federico Gueli, 2024-08-08 08:06:02 +0200 : Update lineage_notes.txt
c64dbc4 - Cornelius Roemer, 2024-08-08 11:41:00 -0300 : Designate MC.2 (KP.3.1.1, S:A845S), and MC.2.1 (S:R237K)
ef5436d - Cornelius Roemer, 2024-08-08 11:44:12 -0300 : Extra KR.4 designations
f9dcaaf - Cornelius Roemer, 2024-08-08 11:46:44 -0300 : Designate KR.1.3 (S:K304Q, S:S60P, Philippines)
4f50432 - Cornelius Roemer, 2024-08-08 15:17:12 -0300 : Designate MP.1 ( S:N487D, Southern Africa), MP.1.1 (S:R346T, S:A348P, Southern Africa)
99f5fa6 - Cornelius Roemer, 2024-08-08 15:21:41 -0300 : Designate JQ.2.1.2 (S:T572I, ORF1b:Q813H, Southern Africa)
3b31d3b - Cornelius Roemer, 2024-08-08 15:38:43 -0300 : Designate MC.3 (KP.3.1.1.3, S:G72R, Spain), MC.4 (KP.3.1.1.4, S:S98F, Spain)
1d153da - Cornelius Roemer, 2024-08-08 15:40:53 -0300 : Designate LB.1.3.3 (S:K182R, from #2723)
74458d8 - Cornelius Roemer, 2024-08-08 15:54:06 -0300 : Designate KP.2.15.1 (S:T572I, from #2711)
76a4024 - Cornelius Roemer, 2024-08-08 16:01:36 -0300 : Designate KP.3.1.7 (S:L84I, from #2709), MQ.1 (JN.1.7.8.1, S:T95I, S:R346T, from #2710), MQ.2 (S:T678I)
5718a44 - Cornelius Roemer, 2024-08-08 16:05:30 -0300 : Designate KP.3.3.4 (ORF1a:I1367L, from #2707)
cd468f9 - Cornelius Roemer, 2024-08-08 16:08:40 -0300 : Designate MR.1 (KP.3.3.4.1, S:S31del, ORF1a:V1236I, from #2704)
2b11a9d - Cornelius Roemer, 2024-08-08 16:19:56 -0300 : Designate MK.3 (S:R346T, S:H445R)
75076cc - Cornelius Roemer, 2024-08-08 16:24:50 -0300 : Designate XED (recombinant of JN.1.4 and LF.1.1.1 (breakpoint 19210-21652), from #2691)
88883f4 - Mydtlwn, 2024-08-09 22:20:25 +0800 : Fix KR.1.3 Alias Error.
58b1468 - Angie Hinrichs, 2024-08-09 11:21:49 -0700 : Merge pull request #2725 from Mydtlwn/master
e4d31e1 - Angie Hinrichs, 2024-08-09 11:23:37 -0700 : Merge pull request #2719 from FedeGueli/patch-54
2c6deaf - Cornelius Roemer, 2024-08-12 19:51:48 +0200 : Designate LZ.2 (S:F456L (T22928C), ORF1a:K1226E, China)
9b9cd84 - Cornelius Roemer, 2024-08-14 23:29:59 +0200 : Designate XEC.1 (S:K182R, ORF1a:L4182F, France/Ireland/Canada)
beb1f1f - Cornelius Roemer, 2024-08-15 00:19:29 +0200 : Designate MS.1 (JN.1.42.2.1, S:31del, ORF1a:E940G, USA/Guatemala)
699fb71 - Cornelius Roemer, 2024-08-15 00:51:00 +0200 : Designate MA.1.1, MA.1.1.1, JN.1.18.8, KU.2.1, KU.2.2, JN.1.59.1
f7249dc - Cornelius Roemer, 2024-08-15 01:24:31 +0200 : Designate LU.2.1, LU.2.1.1, JN.1.16.4
ac17fb3 - Cornelius Roemer, 2024-08-15 01:55:32 +0200 : Designate MT.1 (JN.1.16.4.1, S:S31P, N:P279S)
8b27ff6 - Cornelius Roemer, 2024-08-15 14:20:30 +0200 : Designate KP.2.19, LF.6
43d7733 - Cornelius Roemer, 2024-08-15 16:16:07 +0200 : Designate LF.7, LR.3, XDV.1.1-1.6
7fb8081 - Cornelius Roemer, 2024-08-15 16:22:07 +0200 : Designate MU.1 (KP.1.1.5.1, S:T572I)
5fc6ef4 - Cornelius Roemer, 2024-08-15 18:07:37 +0200 : Redesignate KP.2.14.1 as KP.2.14: there's no evidence for any good sequences not having S:T22N
be8ae9d - Cornelius Roemer, 2024-08-15 18:18:50 +0200 : Clean up MC.2 and MC.2.1
0c67ac2 - Cornelius Roemer, 2024-08-15 18:19:54 +0200 : Designate extra KP.2.14
33300c5 - Cornelius Roemer, 2024-08-15 18:28:10 +0200 : Designate JN.1.4.9 (S:F456L, on branch with JN.1.4.2/5/6 (T18453C), from #2577)
ee0a75b - Cornelius Roemer, 2024-08-15 18:31:47 +0200 : Designate JN.1.38.1 from #2475
610a2f5 - Cornelius Roemer, 2024-08-15 19:38:43 +0200 : Designate MC.5-11.1
0730f27 - Cornelius Roemer, 2024-08-15 19:53:08 +0200 : Designate MC.12-MC.15
096bcaf - Cornelius Roemer, 2024-08-15 20:04:06 +0200 : Designate MC.16, extra LB.1.2.2
a771fcc - Cornelius Roemer, 2024-08-15 20:13:25 +0200 : Designate MB.1.1.1, MV.1
2cc1b3e - Cornelius Roemer, 2024-08-15 20:13:52 +0200 : Add MV alias (MB.1.1.1 = JN.1.1.49.1.1.1)
fa75b1d - Cornelius Roemer, 2024-08-15 20:19:29 +0200 : Designate KP.2.20 and KP.2.20.1
477df9d - Cornelius Roemer, 2024-08-15 20:41:35 +0200 : Designate JN.1.67, JN.1.67.1
2b4bc18 - Cornelius Roemer, 2024-08-15 20:44:45 +0200 : Designate LB.1.4.2, XEF
8d24140 - Mydtlwn, 2024-08-16 06:50:23 +0800 : Fix MC.16,MB.1.1.1ï¼MV.1 Alias Error.
2b3570d - Angie Hinrichs, 2024-08-15 16:47:01 -0700 : Merge pull request #2734 from Mydtlwn/master
47ff6d4 - Federico Gueli, 2024-08-16 02:38:54 +0200 : Update lineage_notes.txt
6170a64 - Cornelius Roemer, 2024-08-16 14:25:39 +0200 : Add KP.2.21
44e1946 - Cornelius Roemer, 2024-08-16 14:43:40 +0200 : Designate KP.2.22-KP.2.26
01db1de - Cornelius Roemer, 2024-08-16 14:57:36 +0200 : Designate KR.4.1 and KS.1.4
d64d652 - Cornelius Roemer, 2024-08-16 15:17:17 +0200 : Rename KP.2.22 to KP.6, rename KP.2.26 to KP.2.22
5d260b1 - Cornelius Roemer, 2024-08-16 15:19:23 +0200 : KP.2.24 is actually just part of KP.2.15, thanks @aviczhl2
cc8281f - Cornelius Roemer, 2024-08-16 15:20:13 +0200 : Rename KP.2.24 to KP.2.24
8288241 - Cornelius Roemer, 2024-08-16 15:42:08 +0200 : Designate KP.2.3.7, redesignate KP.2.21 as XEG
65e5a0b - Cornelius Roemer, 2024-08-16 15:46:53 +0200 : Designate MW.1 (KP.2.3.7 + S:Q239R)
7b1a8c3 - Cornelius Roemer, 2024-08-16 15:48:57 +0200 : Add KP.2.23 designations
c608418 - Cornelius Roemer, 2024-08-16 16:05:44 +0200 : MC.12 designations
5f66271 - Cornelius Roemer, 2024-08-16 16:54:21 +0200 : Designate LF.8, LF.8.1, LF.8.1.1 (S:M153I, S:S31F, S:T22N)
49d9da3 - Cornelius Roemer, 2024-08-16 17:00:39 +0200 : Fill the XEE gap by reassigning XEG, thanks @Over-There-Is
56fe08a - Cornelius Roemer, 2024-08-16 17:30:07 +0200 : Designate MC.17, LW.1.1, LW.1.2, JN.1.16.5
6c26cbf - Cornelius Roemer, 2024-08-16 18:04:03 +0200 : Fix: MC.17 -> KP.3.6
4dbd3a0 - Cornelius Roemer, 2024-08-16 20:46:50 +0200 : Designate LB.1.9 (S:K478T (reversion), G20931T, T29194C, C15960T, India)
a22c382 - Cornelius Roemer, 2024-08-16 20:50:42 +0200 : Designate KP.3.1.8, MY.1
4e445ec - Cornelius Roemer, 2024-08-16 21:18:05 +0200 : Fix alias file, thanks @joshuailevy
a373e04 - Angie Hinrichs, 2024-08-16 14:04:52 -0700 : Merge pull request #2735 from FedeGueli/patch-55
6c1cbb8 - Cornelius Roemer, 2024-08-17 11:52:22 +0200 : XDV.1.7-11, XDR.1.1-2, XEG
0b729a3 - Cornelius Roemer, 2024-08-20 19:15:56 +0200 : Designate LU.2.2 ( S:Q677P, ORF1a:T1000I, Ecuador)
e79381f - Cornelius Roemer, 2024-08-20 19:22:46 +0200 : Designate extra XEC and XEC.1
8536270 - Cornelius Roemer, 2024-08-24 18:59:19 +0200 : Designate LB.1.4.3
20f4b0a - Cornelius Roemer, 2024-08-27 07:31:48 +0200 : Designate LF.9 (S:S60P), LF.9.1 (S:N185D)
0d17efb - Cornelius Roemer, 2024-09-05 14:51:24 +0200 : Designate XDV.1.7.1 ( S:T22N, S:V62F) and XDV.1.9.1 (S:A435S)
6831ab2 - Cornelius Roemer, 2024-09-05 14:55:35 +0200 : Designate LZ.2.1 (ORF10:Q29*)
24c473d - Cornelius Roemer, 2024-09-05 14:59:42 +0200 : Designate MZ.1 (Alias of JN.1.67.1.1, S:S31F)

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