Release notes
52c2083 - aviczhl2, 2023-08-19 01:21:00 +0800 : add 1 ref from main page and 3 refs from sars-cov-2-variants/lineage-proposals
31def30 - Angie Hinrichs, 2023-08-21 10:40:50 -0700 : Merge pull request #2199 from aviczhl2/master
1c8d6e4 - Cornelius Roemer, 2023-08-22 01:37:08 +0200 : Designate FW.1.1 (XBB.1.28.1.1.1, S:N148T, UK) with 50 seqs
5c181b8 - Cornelius Roemer, 2023-08-22 01:45:19 +0200 : Designate JC.1 (XBB.1.41.1.1, S:K77R, Japan/Hawaii) and XBB.1.41.2 (S:S494P)
7b6a943 - Cornelius Roemer, 2023-08-22 01:57:26 +0200 : Designate GA.4.1 (XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar) with 5 seqs
1b2a93d - Cornelius Roemer, 2023-08-22 02:02:06 +0200 : Designate GE.1.1 (XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore) with 30 seqs
6e850c3 - Cornelius Roemer, 2023-08-22 02:03:44 +0200 : Designate GE.1.2 (XBB.2.3.10.1.2, S:N148T, Kenya) with 40 seqs
688cb33 - Cornelius Roemer, 2023-08-22 02:23:06 +0200 : Designate XBB.1.5.102 (C6896T, C14085T, C19488T, Brazil-Amazonas) with 1300 seqs
9953957 - Cornelius Roemer, 2023-08-22 02:25:53 +0200 : Designate JD.1 (XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2203) with 60 seqs
2d25a8d - Federico Gueli, 2023-08-22 09:51:54 +0200 : Update lineage_notes.txt
7b1683c - Angie Hinrichs, 2023-08-22 11:22:47 -0700 : Merge pull request #2204 from FedeGueli/master-2
328785b - Cornelius Roemer, 2023-08-23 23:55:56 +0200 : Designate FL.1.5.2 (S:N481K, S:H681R, England/France/Denmark/US) with 8 seqs
5140e40 - Cornelius Roemer, 2023-08-24 00:20:55 +0200 : Designate JB.2.1 (XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa) with 10 seqs
24b7e71 - Cornelius Roemer, 2023-08-24 00:28:47 +0200 : Designate HK.6 (EG.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA) with 100 seqs
b2febbe - Cornelius Roemer, 2023-08-24 00:41:57 +0200 : Designate GS.2 (XBB.2.3.11.2, S:T470N, Singapore/Brunei) with 20 seqs
63bc309 - Cornelius Roemer, 2023-08-24 00:45:49 +0200 : Designate GS.3 (XBB.2.3.11.3, S:R190S, USA/UK) with 20 seqs
3760d6c - Cornelius Roemer, 2023-08-24 00:49:55 +0200 : Designate GS.4 (XBB.2.3.11.4, M:A104V, ORF1a:A104V, France) with 100 seqs
5dde128 - Cornelius Roemer, 2023-08-24 00:51:12 +0200 : Designate GS.4.1 (XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France) with 35 seqs
cffd0e3 - Cornelius Roemer, 2023-08-24 00:56:17 +0200 : Designate GE.1.3 (XBB.2.3.10.1.3, S:T732I) with 100 seqs
b1d0adc - Federico Gueli, 2023-08-24 00:57:09 +0200 : Update lineage_notes.txt
e58c620 - Cornelius Roemer, 2023-08-24 01:03:11 +0200 : Designate JE.1 (GJ.1.2.1.1, S:478R, Singapore/SouthKorea/US) with 7 seqs
238f48b - Cornelius Roemer, 2023-08-24 01:06:46 +0200 : Designate HG.2 (XBB.2.3.8.2, S:T259I, South Korea/USA) with 60 seqs
7e6a661 - Cornelius Roemer, 2023-08-24 01:31:55 +0200 : Designate JF.1 (XBB.1.16.6.1, S:L455F, USA) with 15 seqs
609bb64 - Cornelius Roemer, 2023-08-24 01:35:34 +0200 : Designate JF.2 (XBB.1.16.6.2, S:Q675H, USA/Wales) with 40 seqs
56f6198 - Cornelius Roemer, 2023-08-24 01:40:52 +0200 : Designate GK.1.4 (S:478R, S:98F, Brazil) with 5 seqs
d3ec617 - Cornelius Roemer, 2023-08-24 01:56:34 +0200 : Designate XCH (Recombinant of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173)
0f61ca7 - Cornelius Roemer, 2023-08-24 02:04:16 +0200 : Designate GK.2.1 (ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C) with 100 seqs
8c1a514 - Cornelius Roemer, 2023-08-24 02:06:25 +0200 : Designate extra HK.3
2d2cdd6 - Cornelius Roemer, 2023-08-24 02:07:13 +0200 : Designate HK.3.1 (EG.5.1.1.3 with S:F157L, China) with 25 seqs
5a316cf - Federico Gueli, 2023-08-24 15:10:20 +0200 : Update lineage_notes.txt
18567dd - Angie Hinrichs, 2023-08-24 08:46:44 -0700 : Merge pull request #2211 from FedeGueli/master-4
ab4243e - Angie Hinrichs, 2023-08-24 09:10:50 -0700 : Merge pull request #2209 from FedeGueli/master-3
e843dc7 - Angie Hinrichs, 2023-08-24 11:05:19 -0700 : Typo fix: new lineage XCH was misspelled XGH in lineages.csv.
60ff1a4 - Cornelius Roemer, 2023-08-24 22:28:26 +0200 : Designate XCJ (Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609)
56e3ad0 - Cornelius Roemer, 2023-08-24 22:31:18 +0200 : Designate GM.3 (XBB.2.3.6.3, ORF1a:R4017K) and GM.3.1 (S:N388K, Japan) with 250/60 seqs
a86f9c6 - Cornelius Roemer, 2023-08-25 00:16:54 +0200 : Designate HC.2 (XBB.1.5.44.2, S:F157L, Canada) with 20 seqs
0b118f7 - Cornelius Roemer, 2023-08-25 00:19:46 +0200 : Designate EG.5.1.7 (XBB.1.9.2.5.1.7, S:K278N) with 19 seqs
0b4d963 - Cornelius Roemer, 2023-08-25 21:02:26 +0200 : Designate JD.1.1 (XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain) with 30 seqs
93d2313 - Cornelius Roemer, 2023-08-25 21:04:04 +0200 : Designate JD.1.2 (XBB.1.5.102.1.2, S:P1162S, Brazil) with 40 seqs
168e64b - Cornelius Roemer, 2023-08-30 19:30:33 +0200 : Designate XBB.1.5.103 (S:F456L (T22928C), S:180/184del, S:N185D, Argentina) with 50 seqs
1cc7ca9 - Cornelius Roemer, 2023-08-30 22:43:17 +0200 : Designate XCH.1 (S:T573I) with 30 seqs
98c5e92 - Cornelius Roemer, 2023-08-30 23:27:36 +0200 : Designate JG.1 (EG.5.1.3.1, S:T732I, France) with 40 seqs
e28cf09 - Cornelius Roemer, 2023-08-30 23:30:01 +0200 : Designate HK.7 (EG.5.1.1.7, S:N148T, China) 40 seqs
94fbed4 - Cornelius Roemer, 2023-08-30 23:33:03 +0200 : Designate EG.2 (S:K304N, Indonesia/Japan) with 40 seqs
ca37eb2 - Cornelius Roemer, 2023-08-30 23:34:16 +0200 : Designate EG.2.3 (S:I742V, Indonesia/Singapore) with 100 seqs
1d90913 - Cornelius Roemer, 2023-08-30 23:35:52 +0200 : Designate EG.2.4 (S:K356T, ORF1a:G2265D, Singapore) with 15 seqs
b375fca - Cornelius Roemer, 2023-08-30 23:38:03 +0200 : Designate EG.2.5 (S:Q675H, Indonesia) with 40 seqs
c7e7c28 - Cornelius Roemer, 2023-08-31 13:38:03 +0200 : Designate EG.13 (ORF1a:K789N) with 1000 seqs
1118b71 - Cornelius Roemer, 2023-08-31 13:41:33 +0200 : Designate FL.4.8 (S:478R, Indonesia) with 190 seqs
c2c2963 - Cornelius Roemer, 2023-08-31 14:06:02 +0200 : Designate FL.4.9 (S:S254P, ORF3a:D173G) with 200 seqs
1403582 - Cornelius Roemer, 2023-08-31 14:07:30 +0200 : Designate FL.4.10 (S:V1129I, China) with 150 seqs
713fcd7 - Cornelius Roemer, 2023-08-31 14:23:59 +0200 : Designate FY.3.2 (ORF1a:E3764G, China, from #2000) and FY.3.3 (ORF3a:V48F, China)
ebc32aa - Cornelius Roemer, 2023-08-31 14:39:52 +0200 : Designate JH.1 (BQ.1.2.2.1, West Africa, S:K182E, S:P251L, S:486A, S:S494P, S:E554K, from #2068) with 13 seqs
9043731 - Cornelius Roemer, 2023-08-31 14:43:24 +0200 : Designate JH.2 (BQ.1.2.2.2, S:A484T, S:V486A, USA/Canada/Finland, from #2068) with 4 seqs
1fbcb3b - Cornelius Roemer, 2023-08-31 14:58:44 +0200 : Designate FL.2.6 (S:N641K, from #2180) with 70 seqs
4749974 - Cornelius Roemer, 2023-08-31 15:09:15 +0200 : Designate XCK (FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215) with 9 seqs
e363047 - Federico Gueli, 2023-08-31 15:21:29 +0200 : Update lineage_notes.txt
a397154 - Cornelius Roemer, 2023-08-31 21:51:06 +0200 : Designate FL.10.2 (S:K356T, S:T523N, Canada/USA) with 30 seqs
2351b67 - Angie Hinrichs, 2023-08-31 16:44:27 -0700 : Merge pull request #2235 from FedeGueli/patch-15
40b2d67 - Cornelius Roemer, 2023-09-01 13:20:22 +0200 : Designate XCL (Recombinant lineage of XBB/GK.2.1, Europe, from #2227) with 40 seqs
8f78e43 - Cornelius Roemer, 2023-09-01 13:35:21 +0200 : Designate FL.30 (S:484K, Greece, from #2206) with 27 seqs
c520d0c - Cornelius Roemer, 2023-09-01 13:58:38 +0200 : Designate GW.1.1 (XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore) with 13 seqs
f75470e - Cornelius Roemer, 2023-09-01 14:00:57 +0200 : Designate GK.2.2 (XBB.1.5.70.2.2, S:E554D) with 19 seqs
5e035b4 - Cornelius Roemer, 2023-09-01 14:06:09 +0200 : Designate HF.1.1 (S:H1101Y, on N:A35T branch, South Korea/USA/Canada) with 70 seqs
154fb44 - Cornelius Roemer, 2023-09-01 14:08:57 +0200 : Designate HF.1.2 (XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA) with 30 seqs
9e08418 - Cornelius Roemer, 2023-09-01 14:10:45 +0200 : Designate XBB.1.5.104 (S:K304Q, USA) with 380 seqs
9f68787 - Cornelius Roemer, 2023-09-01 14:19:15 +0200 : Designate XBB.1.16.23 (S:K304Q, India/USA/Japan/Singapore) with 40 seqs
f9cd663 - Cornelius Roemer, 2023-09-01 14:23:10 +0200 : Designate JH.1 (XBB.1.5.3.1, S:K304Q, USA) with 200 seqs
49aae7b - Cornelius Roemer, 2023-09-01 14:26:33 +0200 : Designate XBB.1.5.105 (S:K304N, USA/Europe) with 70 seqs
9527e15 - Cornelius Roemer, 2023-09-01 14:35:50 +0200 : Designate HK.8 (EG.5.1.1.8, S:L455F, on C11779T branch) with 40 seqs
f271b57 - Cornelius Roemer, 2023-09-01 14:37:25 +0200 : Designate HK.9 (EG.5.1.1.9, S:R190K, on C11779T branch, England) with 60 seqs
36e3fb0 - Cornelius Roemer, 2023-09-01 14:41:13 +0200 : Designate JJ.1 (XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan) with 27 seqs
f655671 - Cornelius Roemer, 2023-09-01 14:44:46 +0200 : Designate HK.10 (EG.5.1.1.10, S:L455F, on C19983T branch, China/England/Denmark) with 19 seqs
1a77042 - Cornelius Roemer, 2023-09-01 23:36:02 +0200 : fix: Deduplicate JH aliasing by making XBB.1.5.3.1 alias to JK
acf9ccc - Cornelius Roemer, 2023-09-01 23:44:04 +0200 : Designate HS.1.1 (XBB.1.5.95.1.1, S:F456L, USA, from #2237) with 50 seqs
5636325 - HynnSpylor, 2023-09-02 05:49:04 +0800 : Update lineage_notes.txt (#2240)
7d172c1 - Federico Gueli, 2023-09-03 00:06:15 +0200 : Update lineage_notes.txt
b440995 - Yat-sing Ng, 2023-09-03 07:22:11 +0800 : Update lineage_notes.txt
2e0850a - Federico Gueli, 2023-09-03 11:54:15 +0200 : Update lineage_notes.txt
5d759d3 - aviczhl2, 2023-09-03 23:01:28 +0800 : Add 4 autoref from main page and 31 from lineage-proposals
59903c3 - Cornelius Roemer, 2023-09-04 14:40:39 +0200 : Designate HK.11 (S:G184S, China/England/SouthKorea, from #2255) with 50 seqs
4fa5b5f - Cornelius Roemer, 2023-09-04 14:52:59 +0200 : Designate JG.2 (EG.5.1.3.2, S:G75V, Europe, from #2249) with 50 seqs
68ae5bf - Cornelius Roemer, 2023-09-04 15:03:29 +0200 : Designate XBB.1.16.24 ( S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223) with 13 seqs
4acecbe - Cornelius Roemer, 2023-09-04 16:06:33 +0200 : Withdraw HK.10 for now, as it turns out it's only 5 sequences from 2 Chinese provinces, rather than 15 global
3a66166 - Cornelius Roemer, 2023-09-04 16:14:40 +0200 : Designate JL.1 (FK.1.3.2.1, S:E1111Q, Japan, from #2168) with 90 seqs
9cbe596 - Cornelius Roemer, 2023-09-05 20:19:03 +0200 : Designate BA.2.86.1 (ORF1a:K1973R, C12815T, mainly Europe, from #2236) with 30 seqs
1833d54 - Cornelius Roemer, 2023-09-05 21:45:49 +0200 : Designate XCM (recombinant of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674)
33a8cba - Angie Hinrichs, 2023-09-05 15:03:40 -0700 : Merge pull request #2245 from FedeGueli/patch-15
f5ceb6a - Angie Hinrichs, 2023-09-05 15:04:56 -0700 : Merge pull request #2247 from FedeGueli/patch-16
0007931 - Angie Hinrichs, 2023-09-05 15:11:10 -0700 : Merge branch 'master' into master
462412f - Angie Hinrichs, 2023-09-05 15:13:58 -0700 : Merge pull request #2253 from aviczhl2/master
e2b2cf9 - Angie Hinrichs, 2023-09-05 15:36:08 -0700 : Merge branch 'master' into patch-3
3df30af - Angie Hinrichs, 2023-09-05 15:40:42 -0700 : Merge pull request #2246 from Over-There-Is/patch-3
3b9cf24 - Cornelius Roemer, 2023-09-06 13:29:08 +0200 : Add extra GY.2/GY.2.1 designations
7e6cabd - Cornelius Roemer, 2023-09-06 13:33:57 +0200 : Add extra FY.4, FY.4.1, FY.4.1.1, FY.4.2 designations
358d45c - Cornelius Roemer, 2023-09-06 13:38:08 +0200 : Designate FY.4.1.2 (XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya) with 100 seqs
ab56ccd - Cornelius Roemer, 2023-09-07 18:40:25 +0200 : Designate EG.6.1.1 (S:484K, S:L242I) with 10 seqs
18177cf - Cornelius Roemer, 2023-09-10 15:42:09 +0200 : Designate GJ.1.2.2 (XBB.2.3.3.1.2.2, S:478R, Europe/US/Australia) with 30 seqs
51f83a7 - Cornelius Roemer, 2023-09-10 15:47:37 +0200 : Designate GJ.1.2.3 (XBB.2.3.3.1.2.3, S:T76I, Japan) with 30 seqs
54dd333 - Cornelius Roemer, 2023-09-10 15:51:25 +0200 : Designate GJ.1.2.4 ( XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea) with 30 seqs
9f62ceb - Cornelius Roemer, 2023-09-10 15:56:03 +0200 : Designate GJ.1.2.5 (XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA) with 50 seqs
67eaa2d - Cornelius Roemer, 2023-09-10 16:16:51 +0200 : Add extra XCM designations
ae63860 - Cornelius Roemer, 2023-09-10 16:31:40 +0200 : Designate FL.4.11 (XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan) with 200 seqs
7476f60 - Cornelius Roemer, 2023-09-10 16:34:57 +0200 : Add additional XCK designations
24cc70f - Cornelius Roemer, 2023-09-10 16:37:00 +0200 : Designate HK.3.2 (S:Q14K, China) with 10 seqs
4be004b - Cornelius Roemer, 2023-09-10 16:38:06 +0200 : Designate HK.3.3 (S:S256L, N:P364L, China/Singapore) with 10 seqs
feaf3b9 - Cornelius Roemer, 2023-09-10 17:19:08 +0200 : Designate EG.14 (Orf1b:K1383R, #2274) with 500
2de0e08 - Cornelius Roemer, 2023-09-10 17:22:02 +0200 : Designate GK.3.2 (S:T572I, USA, #2272) with 30 seqs
5af35f8 - Cornelius Roemer, 2023-09-10 17:30:46 +0200 : Designate CK.1.1.2 (B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, #2271)
72c46b8 - Cornelius Roemer, 2023-09-10 17:35:11 +0200 : Designate EF.3 (BQ.1.1.13.3, Japan, S:S704T)
3f25b19 - Cornelius Roemer, 2023-09-11 14:06:39 +0200 : Designate GW.5.1 (XBB.1.19.1.5.1, ORF3a:W149C, Pakistan) with 60 seqs
67b4b78 - Cornelius Roemer, 2023-09-11 14:08:13 +0200 : Add extra GW.5 designations
8d67b7a - Cornelius Roemer, 2023-09-11 14:12:36 +0200 : Designate GW.5.1.1 (S:A475V, S:F79S, Pakistan, from #2277) with 7 seqs
0985819 - Cornelius Roemer, 2023-09-11 14:15:32 +0200 : Designate DV.7.1.1 (S:K679R, Spain) with 20 seqs
dd9da93 - Cornelius Roemer, 2023-09-11 14:18:45 +0200 : Designate DV.7.1.2 (ORF1a:A4162V, Spain/England) with 150 seqs
072c887 - Cornelius Roemer, 2023-09-11 16:06:46 +0200 : Designate EG.5.1.8 (S:L455F, China (most of it with C12100G)) with 50 seqs
6c69095 - ciscorucinski, 2023-09-14 00:48:29 +0900 : initial workflow commit
3ce3206 - ciscorucinski, 2023-09-14 01:17:21 +0900 : collect, transform, and commit gh issue-milestone api call
a848b7a - ciscorucinski, 2023-09-14 02:12:09 +0900 : collect, transform, and commit gh issue-milestone api call
5e55afa - Cornelius Roemer, 2023-09-17 15:01:19 +0200 : Designate GK.2.3 (XBB.1.5.70.2.3, S:K356T, England/US-NY) with 11 seqs
6d4f12c - Cornelius Roemer, 2023-09-17 15:39:37 +0200 : Designate GK.4 (S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276), with 15 seqs
bd37247 - Cornelius Roemer, 2023-09-17 16:09:24 +0200 : Designate EG.5.1.9 (S:L176F) with 60 seqs
b084562 - Cornelius Roemer, 2023-09-17 16:13:07 +0200 : Designate JG.3 (S:L455F, S:S704L, Europe) with 60 seqs
e6a71b0 - Cornelius Roemer, 2023-09-17 16:29:28 +0200 : Designate XBB.1.5.106 (S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270) with 120 seqs
97b03a6 - Cornelius Roemer, 2023-09-21 19:19:24 +0200 : Designate XCN (FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China) with 6 seqs
6dca7d9 - Cornelius Roemer, 2023-09-21 19:24:07 +0200 : Designate FL.31 (XBB.1.9.1.31, ORF1b:M657I) with 250 seqs
cc7f7fe - Cornelius Roemer, 2023-09-21 19:26:26 +0200 : Designate FL.31.1 (XBB.1.9.1.31.1, S:478R, S:D80H, S:Q613H, Morocco/Europe/US/Canada) with 30 seqs
20b311a - Cornelius Roemer, 2023-09-21 19:45:57 +0200 : Designate FL.20.2 (XBB.1.9.1.20.2, S:478R) with 40 seqs
73afbe1 - Cornelius Roemer, 2023-09-21 19:48:45 +0200 : Designate FL.32 (XBB.1.9.1.32, S:E554Q, S:V6L) with 60 seqs
462959b - Cornelius Roemer, 2023-09-21 19:51:21 +0200 : Designate FL.32.1 (XBB.1.9.1.32.1, S:F456L, USA) with 25 seqs
39f8f2e - Cornelius Roemer, 2023-09-21 19:56:16 +0200 : Designate FL.10.3 (XBB.1.9.1.10.3, S:G181R) with 30 seqs
feba1fa - Cornelius Roemer, 2023-09-21 20:05:09 +0200 : Designate FL.33 (ORF1b:A1377V) with 300 sequences
ab210f7 - Cornelius Roemer, 2023-09-21 20:09:27 +0200 : Designate FL.33.1 (XBB.1.9.1.33.1, S:478R, Georgia) with 100 seqs
f071d9e - Cornelius Roemer, 2023-09-21 20:14:43 +0200 : Designate FL.34 (S:D1118Y, South Korea) with 150 seqs
3ddfc81 - Cornelius Roemer, 2023-09-21 20:20:24 +0200 : Designate FL.35 (ORF8:S103L, South Africa) with 200 seqs
d829407 - Cornelius Roemer, 2023-09-22 14:13:58 +0200 : Designate JM.1 (XBB.1.16.15, S:Q52H, England/Wales) with 50 seqs
45f3639 - Cornelius Roemer, 2023-09-22 14:16:07 +0200 : Designate JM.2 (XBB.1.16.15.2, S:R78S, Europe/North America) with 40 seqs
c18deef - Cornelius Roemer, 2023-09-22 14:29:23 +0200 : Designate GS.5 (XBB.2.3.11.5, M:A104V, S:Q218H) with 50 seqs
53daf07 - Cornelius Roemer, 2023-09-24 14:57:51 +0200 : Designate GK.2.1.1 (XBB.1.5.70.2.1.1, S:P1162S, main donor of XCL) with 20 seqs
3d3bfbb - Cornelius Roemer, 2023-09-24 15:32:03 +0200 : Designate EG.4.5 (S:478R, Indonesia/France) and CH.1.1.31 (South Africa)
51ccae0 - Cornelius Roemer, 2023-09-24 15:35:30 +0200 : Designate JP.1 (CH.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa) with 6 seqs
3461b2a - Cornelius Roemer, 2023-09-24 15:40:47 +0200 : Designate CH.1.1.32 ( S:L858I, N:P80Q, ORF1a:E974A) with 260 seqs
a01b6bd - Cornelius Roemer, 2023-09-24 16:35:28 +0200 : fix: free up JN alias as it was added by accident
6d41bdc - Cornelius Roemer, 2023-09-24 17:47:44 +0200 : Add alias-key-json CI test
06c11c9 - Cornelius Roemer, 2023-09-24 17:47:57 +0200 : Add precommit config
a452e5e - Cornelius Roemer, 2023-09-24 18:09:06 +0200 : Add fast duplicate detection test to precommit
4127017 - Cornelius Roemer, 2023-09-24 18:17:35 +0200 : Basic check on lineage notes (2 column tsv with unique keys)
52d7b9f - Memorable, 2023-09-25 00:30:22 +0800 : Update lineage_notes.txt (#2279)
7146f6e - Cornelius Roemer, 2023-09-24 18:37:41 +0200 : Update workflow actions and format yamls
39c1def - Cornelius Roemer, 2023-09-24 18:49:31 +0200 : Add actionlint to precommit, and set python-version in workflow
67f1f2a - Cornelius Roemer, 2023-09-24 18:52:07 +0200 : Use non-local actionlint
0c2b476 - Cornelius Roemer, 2023-09-24 18:54:38 +0200 : Run workflows only when relevant files affected
1c2e370 - Cornelius Roemer, 2023-09-26 14:54:51 +0200 : Designate JD.1.1.1 (XBB.1.5.102.1.1.1, S:Y248H) with 6 seqs
5f56779 - Cornelius Roemer, 2023-09-26 14:56:07 +0200 : Designate JD.1.1.2 (XBB.1.5.102.1.1.1, S:E583D, Ireland/UK) with 20 seqs
7985b2c - Cornelius Roemer, 2023-09-26 15:02:48 +0200 : Designate XCP (EG.5.1 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772) with 6 seqs
9858959 - Cornelius Roemer, 2023-09-26 15:05:26 +0200 : Designate EG.5.1.10 (ORF1a:I3758V, Portugal/Spain) with 70 seqs
69c69bf - Cornelius Roemer, 2023-09-26 15:09:26 +0200 : Designate GA.4.1.1 (XBB.1.17.1.4.1.1, S:Q675H) with 4 seqs
595bcec - Cornelius Roemer, 2023-09-26 15:31:02 +0200 : Designate FR.1.5 (B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan) with 20 seqs
e42a0c9 - Cornelius Roemer, 2023-09-26 15:38:35 +0200 : Designate EP.1.1 (BM.1.1.4.1.1, ORF1a:P4120S, ORF8:Q18H, Bhutan) with 30 seqs
28db02d - Cornelius Roemer, 2023-09-26 15:40:13 +0200 : Designate EP.1.1.1 (S:T22N, S:T76I, S:T1006A, Bhutan/Thailand/Singapore) with 10 seqs
909106a - Cornelius Roemer, 2023-09-26 15:58:17 +0200 : Designate FL.36 (XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark) with 12 seqs
6b00244 - Cornelius Roemer, 2023-09-26 16:00:47 +0200 : Designate HC.4 ( XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada) with 10 s eqs
62ce3de - Cornelius Roemer, 2023-09-27 16:23:22 +0200 : Designate FL.15.1 (S:L455F, ORF1a:T2007I, on ORF1a:S2185N branch, from #2293) with 30 seqs
c90eba8 - Cornelius Roemer, 2023-09-27 16:26:16 +0200 : Designate FL.15.1.1 ( S:A475V, Canada/Romania/Belgium) with 8 seqs
81a254a - Cornelius Roemer, 2023-09-27 16:28:25 +0200 : Designate FL.15.2 (XBB.1.9.1.15.1, S:Q14H, China) with 50 seqs
f2de805 - Cornelius Roemer, 2023-09-27 16:29:55 +0200 : Designate FL.15.3 (S:G181V, North America) with 60 seqs
c9b20c3 - Xu Zou, 2023-09-29 09:53:21 +0800 : Add 5 autorefs from main repo and 18 from lineage-proposal repo (#2299)
9a54670 - Cornelius Roemer, 2023-09-29 16:17:58 +0200 : Designate JN.1 (BA.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe) with 5 seqs
66ae9c7 - Yat-sing Ng, 2023-09-30 16:54:27 +0800 : Update lineage_notes.txt
2a77486 - Cornelius Roemer, 2023-09-30 20:27:37 +0200 : Fix: alias value must start with A, B or X
1b91ead - Angie Hinrichs, 2023-10-03 10:22:40 -0700 : Merge pull request #2302 from Over-There-Is/patch-4
3f52f40 - Angie Hinrichs, 2023-10-03 11:06:58 -0700 : Merge pull request #2281 from ciscorucinski/feature/workflow/issue-milestone-collector
ec1bf5f - Cornelius Roemer, 2023-10-04 16:40:23 +0200 : Designate JD.1.1.3 (S:T470N, ORF1a:V1584M, France/Denmark) with 8 seqs
5a1a8c3 - Cornelius Roemer, 2023-10-04 16:44:13 +0200 : Add extra designations for JD.1.1.1/2 and XCP
4068b01 - Cornelius Roemer, 2023-10-04 16:50:20 +0200 : Designate JD.2 (XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil) with 1200 seqs
0b7f46a - Cornelius Roemer, 2023-10-04 17:14:52 +0200 : Designate GJ.1.2.6 (S:478R, on ORF1b:S997P branch) with 25 seqs
d0c77a4 - Cornelius Roemer, 2023-10-04 17:21:18 +0200 : Designate GJ.1.2.7 (S:478R, T6511C, on ORF1a:H919Y branch) with 30 seqs
0144b00 - Cornelius Roemer, 2023-10-04 17:27:29 +0200 : Designate JE.1.1 (S:Q52R) with 30 seqs
d945abd - Cornelius Roemer, 2023-10-04 17:31:40 +0200 : Designate GJ.1.2.8 (XBB.2.3.3.1.2.8, S:T747I, USA) with 50 seqs
897f423 - Cornelius Roemer, 2023-10-04 17:37:42 +0200 : Designate GJ.5 (XBB.2.3.3.5, S:478R, A11794G, C13138T) with 270 seqs
7122242 - Cornelius Roemer, 2023-10-04 17:39:26 +0200 : Designate GJ.5.1 (S:S255F, ORF1a:A540V, ORF1a:A3963V) with 100 seqs