github cov-lineages/pango-designation v1.1
pango designations v1.1

latest releases: v1.27, v1.26, v1.25...
3 years ago

Major release

  • Update to lineages from full manual curation of global tree, with GISAID data recent of 2021-02-18.
Lineages designated:	          1,247
Total sequences designated:	  469,042
  • Full curation notes found in curation_notes directory, with information on Lineage, number of SNPs, example sequence, designator, rough size and lineage description.

Full set of aliases

  • Also hosted now in full_alias_key.txt
{'C': 'B.1.1.1',
 'D': 'B.1.1.25',
 'G': 'B.1.258.2',
 'K': 'B.1.1.277',
 'L': 'B.1.1.10',
 'M': 'B.1.1.294',
 'N': 'B.1.1.33',
 'P': 'B.1.1.28',
 'R': 'B.1.1.316',
 'S': 'B.1.1.217',
 'U': 'B.1.177.60',
 'V': 'B.1.177.54',
 'W': 'B.1.177.53',
 'Y': 'B.1.177.52',
 'Z': 'B.1.177.50',
 'AA': 'B.1.177.15',
 'AB': 'B.1.160.16',
 'AC': 'B.1.1.405',
 'AD': 'B.1.1.315',
 'AE': 'B.1.1.306',
 'AF': 'B.1.1.305',
 'AG': 'B.1.1.297',
 'AH': 'B.1.1.241',
 'AJ': 'B.1.1.240',
 'AK': 'B.1.1.232',
 'AL': 'B.1.1.231',
 'AM': 'B.1.1.216',
 'AN': 'B.1.1.200',
 'AP': 'B.1.1.70',
 'AQ': 'B.1.1.39',
 'AS': 'B.1.1.317'}

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