Added
- “Clip” to percentile range for continuous data - (metadata and expression) outside of range will be excluded from histograms and grayed out on layout. This improves handling of zero-heavy distributions, or other cases where outliers need to be suppressed (#570, #672)
- Prepare calculates and adds QC metrics as to continuous metadata (uses new ScanPy 'calculate_qc_metrics') (#697)
Changed
- Documentation updates (#691, #706, #649, #702)
- Color-by buttons toggle if clicked twice (#693)
- ScanPy requirements updated to 1.3.7(#688)
- Server-side refactoring in prep for PyQt & notebook support (#711)
- Performance improvements accessing large sparse expression data (#719)
Fixed
- Undo/redo improvements - histogram and graph selection now correctly interacts with undo/redo (#679, #663)
- Selection of continuous data dimensions containing NaN values would select incorrect cells (#715)
- Graph pan/zoom and selection now stay in sync (#622)
- Graph selection paints correctly when window resized (#203)
- Gene name type-ahead no longer clears text on blur (#573)
- Would fail if simplejson was installed in python environment (#700)