chanzuckerberg/cellxgene 0.18.0

Release 0.18.0

on GitHub

New features

• Introduced CLI parameter --X-approximate-distribution for users to specify the distribution of their data, and override the default heuristic determination
• For categories with the number of labels over the number set by --max-category-items (default 1000), we now include a label that aggregates all labels over the limit instead of truncating the list of labels

Breaking changes

• Removed support for experimental features (--experimental-annotations-ontology, --experimental-annotations-ontology-obo and --experimental-enable-reembedding)

Bug fixes

• Fixed a bug in differential expression calculation by changing the t-test calculation to consistently assume normally distributed data, and to log data when data is not normally distributed based on a heuristic
• Fixed a bug in --max-category-items