Summary: 0.15 resolves incompatibilities with the current anndata/scanpy releases, improves ontology-driven label input in user annotations, moves annotations to a supported feature, and resolves a number of miscellaneous bugs and UI issues.
Added:
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User annotations feature has moved to a fully supported feature, and is no longer experimental (nb. command line params have changed, and annotations are enabled by default - see documentation for more information).
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Experimental support for ontology-driven annotation/label input was further enhanced. Users can now pick from an ontology or define their own label in a single dialog, and ontologies are available for both label and category creation and editing.
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Code coverage reports added to the github repo CI pipeline
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Significant additions to unit & smoke tests and configuration testing in the CI pipeline
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Added experimental support computed re-embedding on user-selected cell sets.
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Better handling of annotations with very large number of categorical values.
Changed:
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Resolved incompatibility with annata 0.7 and remove pinned Python dependencies for anndata, h5py and tables modules. This resolves several compatibility issues with H5AD files. #1157, #1202
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Reset UI replaced with Subset and Unsubset (#1183), and unsubset no longer deletes genes in the right side bar (fixes #1171).
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Work in preparation for a web-hosted cellxgene (not yet available or complete), including:
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Javascript and Python package dependencies updated.
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Variety of small UI improvements throughout the application, including more readable data labels on the main graph (#1141, #1160), better handling of long strings (#1206), improved enable/disable state on buttons, etc.
Fixed: