cBioPortal/cbioportal v3.7.0 on GitHub

🧬 Features

Customizable default thresholds for P-value and score - frontend @dianab0 (#3892)
Allow custom tabs on patient page as well @dianab0 (#3862)
(Generic Assay) Study view patient level data tweaks @dippindots (#3772)
Oncoprint performance optimizations @adamabeshouse (#3799)

Check and remove invalid foreign key in migrate_db.py @dippindots (#8795)
update validator to ignore new normals folder @yichaoS (#8790)
fix hover detection bug @Rajat-Sirohi (#3891)
Fix keycloak db error on circleci @inodb (#3894)
Fixed issue where Show genes didn't work and added an end to end test @dianab0 (#3886)
Timeline: fix tooltip date formatting for negative days @adamabeshouse (#3881)
Fix mutation table column hover detection bug @Rajat-Sirohi (#3880)

SV: Make cancer study chart slices color consistent when applying filter @kalletlak (#3885)

Generic Assay data count endpoint @dippindots (#8777)
Update fetchMolecularProfileSampleCounts endpoint to support patient level count @dippindots (#8779)

Hide logout button in cBioPortal header via portal.properties @pvannierop (#3879)
try diff backend image circleci @inodb (#3883)
Fix localdb reporting on circleci @alisman (#3889)
Webdriver.io: Use out-of-box json reporter instead of custom reporter @alisman (#3882)
Impl. skin.hide_logout_button property @pvannierop (#8784)

Generic Assay Patient Level Support
Removal of legacy database fields
- Table Type_of_cancer remove field CLINICAL_TRIAL_KEYWORDS
- Table Cancer_study remove field SHORT_NAME
- Table Sample remove field TYPE_OF_CANCER_ID

RFC56: Annotation and mutation status filtering for Study View and Group Comparison Views @pvannierop (#3848)