cBioPortal/cbioportal v3.6.19

on GitHub

✨ Enhancements

• Add no-transaction argument to migrate_db.py @pvannierop (#8672)
• Patient page: show Event Info column by default on structural variant table @kalletlak (#3801)
• Mutations tab: make legend selector work like a checkbox @leexgh (#3786)

🐛 Bug Fixes

• Query page sample count should show sum of each study's allSampleCount property @alisman (#3798)
• Genomic evolution feature: highlight only partially works when splitting samples #8058 @dianab0 (#3794)
• Fix group comparison download @dippindots (#3783)
• Fix SVG file download error @jagnathan (#3812)
• Genomic evolution fixes - VAF Chart, Group By issues @dianab0 (#3806)

🏎 Performance Tweaks

• Enable general cache on study-view api's @kalletlak (#8671)
• Cache Generic Assay Meta endpoint and improvements @dippindots (#8702)
• Optimize fetching structural variants @kalletlak (#8691)

⚙️ REST API Changes

• Export namespace columns through Mutations endpoint @pvannierop (#8681)
• Fix Swagger docs for DataAccessTokenController @pvannierop (#8712)

🧹 Cleanup & Refactoring 🔧

• Get rid of temporary s3 cache solution @alisman (#3803)

📘 Documentation

• Doc update related HGNC-based gene table update @yichaoS (#8460)
• Update News.md @ritikakundra (#8717)
• Update News @inodb (#8704)

👷‍♀️ Testing, Configuration & Deployment

• Fix screenshot after new gene data table and expression data changes @alisman (#3800)
• Remove backend var from custom.sh @alisman (#3792)
• Remove app.name configuration checks @Rajat-Sirohi (#8656, #3773)
• Added unit tests for Group By function of Genomic Evolution VAF Chart @dianab0 (#3817)
• Add wait for visible to stabilize e2e test and repair oql edit tests @alisman (#3818)
• Fix some e2e tests @alisman (#3814)
• Do not engage mouse in e2e test @alisman (#3810)
• Update screenshots after data changes @alisman (#3808)

🧰 Maintenance

• Fix screenshot after new gene data table and expression data changes @alisman (#3800)

✂︎ Merge & Revert

• Rfc56 driver filtering @pvannierop (#8647)
• Allow NA for MUTATION_STATUS field in /filtered-samples endpoint @pvannierop (#8692)
• Revert "Merge pull request #8647 from cBioPortal/rfc56_driver_filtering" @inodb (#8722)
• Changes related to RFC56 revert @pvannierop @inodb (cBioPortal/cbioportal-frontend#3823)

🕵️‍♀️ Full commit logs

• Backend: v3.6.18...v3.6.19
• Frontend: cBioPortal/cbioportal-frontend@v3.6.18...v3.6.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning