cBioPortal/cbioportal v3.6.18

on GitHub

✨ Enhancements

• Get clinvar from GN annotation endpoint @leexgh (#3763)
• force browser caching on reference genome data @alisman (#3787)

🐛 Bug Fixes

• Fix url for Cancer Digital Slide Archive iframe @alisman (#3779)

🏎 Performance Tweaks

• Improve performance thru code optimizations and leveraging cache
  • Frontend (#3782)
    • use profile ids in API calls over individual sample IDs to leverage redis cache
    • chunk up large API requests into several smaller ones
    • don't wait for gene panel data api on the study view
    • Change chunk size for oncokb fetches to spread over more requests @alisman (#3789)
    • Use localdb cache (localforage) for caching ref genome data @alisman (#3791)
    • chunkCalls method to chunk large arguments to API calls @adamabeshouse (#3752)
    • Load molecular data using profileIds instead of samples ids @alisman (#3769)
    • Fetch genepanel data for ALL molecular profiles, not just selected @alisman (#3775)
    • (Study view) waiting for km plots @dippindots (#3788)
  • Backend (#8639)
    • use custom redis cache instead of spring's version (#8599)
    • generate two docker images, one with redis cache support and one without
    • Add several responses to the static cache to avoid recalculations
    • optimize logic of several endpoints
      • gene api (see also #8653)
      • alteration enrichments
      • clinical data bin counts
      • patient enrichments
    • add querying by profiled ids for mutation and sv apis (see also #8660)
    • Query for mutations by molecular profile id instaead of sample ids @adamabeshouse (#3781)

👷‍♀️ Testing, Configuration & Deployment

• Fix failing pathway mapper screenshot tests @onursumer (#3774)

📦 Package Improvements

• Get clinvar from GN annotation endpoint @leexgh (#3763)
• Convert variant scss to a module and clean up unused css @onursumer (#3780)

🧹 Cleanup & Refactoring 🔧

• Converted AlterationMyBatisRepository.java unique collections to sets @Rajat-Sirohi (#8650)

🕵️‍♀️ Full commit logs

• Backend: v3.6.17...v3.6.18
• Frontend: cBioPortal/cbioportal-frontend@v3.6.17...v3.6.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning