- upgrade to spring security v5
- database migration to v2.7.0. This moves computed mutation_count and fraction_genome_altered to clinical data instead of having their own tables. See the docs for an explanation of how to migrate. This migration recomputes all mutation counts and fraction genome altered. For our production database it took 5-10m. It will depend on the amount of data you have and the performance of your mysql server.
- Return p and q values for spearman calculation for coexpression
- Show git commit info in /api/info endpoint. This uses the git commit id plugin, which might break your build if you don't compile with the
.gitfolder present. It's easily ignored by running with heroku and public profilemvn -Pheroku,public clean install
cbioportal/cbioportal-frontend:
- Handle mutation count and fraction genome altered as clinical data
- Show p and q values for spearman in coexpression tab
Detailed issues/PRs