Minor update with bug fixes:
- Use mapped file dictionary in MergeBamAlignment (#739)
- Update tests to remove temporary data upon completion.
- Revert "Fix sorting of lifted intervals in LiftOverIntervalList (#726) (#682)" (#737)
- Fix case error in usage example of SamToFastq
- Fix sorting of lifted intervals in LiftOverIntervalList (#726) (#682)
- Exposed options to reverse and rc attributes in MergeBamAlignment. (#731)
- Fix sorting of lifted intervals in LiftOverIntervalList (#726)
- Added '.genotype_concordance' into the output VCF name. (#725)
- Code cleaning (#717)
- Small changes to how MBA works with bacterial contamination (#701)