- Update htsjdk 2.23.0 -> 2.24.0 (#1641)
- Include common (engine-level) args in help output. (#1580)
- [refactor] Large refactor of IlluminaBaseCallsConverter (#1626)
- Refactor the IlluminaBasecallsConverter and IlluminaDataFactory to normalize creation when dealing with cbcls vs bcls
- Include a BasecallsConverter that doesn't do read name sorting by default
- Performance enhancements