- Fast fail if R is not installed in tools that use R (#1613)
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- enable CollectIndependentReplicateMetrics to read a cram file (#1599)
- Remove cluster intensity data.
- Check Sequence Dictionaries Match in CollectWgsMetrics (#1610)
- Add flowcell location stratifier for CollectSamErrorMetrics (#1603)
- GtcToVcf should not fail if AS tag is missing (#1445)
- Increase fraction of target coverage for panel metrics (#1542)