- Fix bug in VcfToAdpc Some poor performing sites in VCFs have null normalized X or Y intensity. This fixes the code to handle these.
- Speeds up MarkDuplicates on queryname input by using the in memory read-ends map. (#1411)
- Document two CLPs
- Update plugin versions for github-pages documentation (#1405)
- Removing a spurious newline from the logging output of ReorderSam (#1403)