• GL-422 Move MergePedIntoVCF into picard (#1356)
• MergeSamFiles from cloud (#1346)
• Change default to not throw exception for a call on a zeroed out assay Reverted InfiniumDataFile byteArray <-> Int/Float back to bitwise operations for performance reasons (using ByteBuffer was very slow) Added tests
• Fixes several small issues that needed some help (#1316)
• refactored IntervalListTools to use a "map-reduce" paradigm (#1319)
• Add MIN_TARGET_COVERAGE to HsMetrics (#1345)
• Fix travis build badge (#1357)
• VcfToAdpc a tool to generate an adpc.bin file (Illumina genotyping intensity data) from a Genotyping Arrays VCF.