• Tidy up TileMetricsOutReader a bit. (#1200)
• MarkDuplicates to accept Query-Grouped (not Sorted) input and a slight change in tiebreak order
• Adding a LIBRARY field to the umi metrics file in UmiAwareMarkDuplicatesWithMateCigar (#1193)
• Adding error in LiftoverVcf if reference dictionary does not exist (Issue #1157) (#1189)
• new CLP: CollectSamErrorMetric (#1180)
• Merge branch 'epam-ls_bug_collectmultiplemetrics_no_refflat' of https://github.com/EpamLifeSciencesTeam/picard into epam-ls_bug_collectmultiplemetrics_no_refflat
• Bug when no refflat file input in CollectMultipleMetrics fixed. New test for CollectMultipleMetrics.