• Yf documentation update 2 (#1028)
• Remove extra newline in IntervalListTools summary line. (#1054)
• Upgrade to Barclay 2.0.0. (#1053)
• Documentation update for several command-line tools (#1021)
• Yf documentation update 3 (#1045)
• Enhances MergeVcfs documentation (#1012)
• New program group definitions and tool assignments. (#1043)
• Only check expected output cycles (#1049)
• MOAR tests for LiftOverVcf (#1050)
• Documentation Updates (#1051)
• responding to comments, adding ViewSam
• Make TargetMetrics public (#1048)
• Pull out some of the metrics being fixed in HsMetricsCollector into a separate method (#1046)
• Updating documentation on ValidateSamFile
• Improving SamToFastq documentation
• Updating UmiAwareMarkDuplicates
• Adding comments for UmiAwareMarkDuplicates
• Adds FastqToSam javadoc documentation
• Adds javadoc documentation to GatherBamFiles
• Added Javadoc to BamToBfq, updating Picards's command line help to have the same content.
• Documentation fixes for MergeSamFiles
• Adds documentation for CollectRawWgsMetrics and CollectTargetedPcrMetrics
• Adding javadoc to CollectHsMetrics