- Adding mode and 95th percentile to InsertSizeMetrics. (#1001)
- Bug fix: CollectWgsMetricsWithNonZeroCoverage fails to produce a plot (#1031)
- Changes: (#1006)
- Add additional LiftoverVcf tests (#1011)
- Enable FilterVcf to filter "sites only" VCFs (#962)
- Add KEEP_FIRST_DUPLICATE option to RevertSam. (#1029)
- Update ExtractIlluminaBarcodes.java (#977)
- incorporate htsjdk 2.13.1 (#1007)
- Fix up adapter clipping tags after an adapter is selected (#1020)