v0.1.10
- [slivar ddc] fix bug when selecting sample filters.
- [slivar ddc] UI fix: remove button when [x] is clicked.
Installation
Just grab the binary
You can download it and use it without any other software. This is the recommended binary.
wget, chmod +x and start analyzing.
users can also use slivar via docker at brentp/slivar:v0.1.10
gnotate annotation files
the gnotation files for fast annotation remain unchanged except for the addition of topmed.
Users can create their own gnotation files with slivar make-gnotate, but we provide:
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gnomad for hg37 with AF popmax, numhomalts (total and controls only) here
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gnomad for hg38 with AF popmax, numhomalts (updated in release v0.1.2) here
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gnomad genomes (71,702 samples) for hg38 with AF popmax, numhomalts (updated in release v0.1.8) here
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spliceai scores (maximum value of the 4 scores in spliceai) here
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topmed allele frequencies (via dbsnp) these can be used with
INFO.topmed_af. Useful when analyzing data in hg38 because some variants in hg38 are not visible in GRCh37