Changelog
Additions
- Added
application.muscle.Muscle5App
to support the changed CLI of Muscle 5 - Added
structure.orient_principal_components()
to orient atom coordinates
to the given axes biotite.structure.io.pdbx.get_structure()
useslabel_xxx
orauth_xxx
field as fallback, if the respective other one is not available- Added
default_bond_type
parameter to
biotite.structure.io.write_structure_to_ctab()
and
biotite.structure.connect_via_distances
to allow the user to change the
BondType
in the generatedBondList
Fixes
sequence.io.gff.GFFFile.read()
is now able to read GFF records with trailing
tabs- Fixed
DeprecationWarning
instructure.align_vectors()
(#295) - Fixed alignment in atom name column in
structure.io.pdb.PDBFile.write()
- Fixed error handling in
structure.index_xxx()
functions, if invalid input
shape is given - Ensured quoted values in looped categories will not be truncated in
structure.io.pdbx.PDBxFile.set_category()