• Fixed a bug that now allows blocked intersection to be counted based on unique base pairs of overlap. The resolution for issue 750 in version 2.29.0 mistakenly allowed for fractional overlap to be counted based upon redundant overlap.
• Moved to Github Continuous Integration for automatic testing.
• Fixed a bug that injected erroneous quality values with BAM records had no valid quality values.
• Fixed a bug that destroyed backwards compatibility in the getfasta tool. Thanks to Torsten Seeman for reporting this.
• Fixed a corner case bug in the reldist tool.
• Fixed a bug in the bedtobam tool that caused the last character in read names to be removed.
• Fixed a bug causing a segfault in the jaccard tool.
• Fixed a bug causing a corner case issue in the way coordinates are reported in the flank tool.