1. Included support for htslib to enable CRAM support and long-term stability (Thanks to Hao Hou!)
2. Included support for genomes with large chromosomes by moving to 64-bit integers throughout the code base. Thanks to Brent Pedersen and John Marshall!
3. We now provide a statically-linked binary for LINUX (not OSX) systems (see "bedtools" link below).
4. As a result of 1-3, tools are ~10% faster.
5. Various minor bug fixes.