I wouldn't have realized if Chicken Knife didn't tell me about it, but the compilation was no longer patching the map changes made to the hack, like the Sanctuary door, Zora's Domain sign, Kakariko shortcut, etc.
This was because Flips used the IPS patch (map_layouts/subtitle_layouts), but kept the patched ROM in the local directory where the IPS was located. I have fixed the Makefile for the project, so now the map changes are properly patched-in and compiled with the Redux project.
I have also updated all of the major patches, as well as all the Original HUD patches for Retranslation.
No major changes have been added to the hack, but I think this bugfix does need a minor subversion update.
I have also included the Original HUD optional patches in this new ZIP, but me mindful about how to properly patch those in, please read in detail the ReadMe file inside the Original HUD folder for proper instructions.