Changelog for humans
https://docs.openfree.energy/en/latest/CHANGELOG.html#v1-12-0
All PRs included in this release:
- Switch repeat id assignment from leg to repeat in AFE Protocols by @IAlibay in #1948
- Support for charge changes in the HybTop protocol for explicitly solvated systems by @hannahbaumann in #1978
- Cinnabar update by @jthorton in #1989
- Add structural analysis to the SepTop protocol by @hannahbaumann in #1982
- Use unbiased std for uncertainty estimates by @jthorton in #2000
- Updated the CLI to use unbiased std for errors by @jthorton in #2018
- add other cli commands to docs by @atravitz in #2017
- add contributing guidelines by @atravitz in #1580
- remove warning for element changes by @atravitz in #1965
- testing: catch konnektor warnings by @atravitz in #2027
- turn off api break check (for now) by @atravitz in #2034
- split api break test into two parts by @mikemhenry in #2037
- bump env to konnektor 0.4.0 by @atravitz in #2026
- Test kartograf 2.0 by @mikemhenry in #2031
- add to_rbfe_deprecation news item by @atravitz in #2044
- fix: add dep for example notebook testing by @atravitz in #2045
- Fix SepTop resume test by @IAlibay in #2048
- add contributing guide and code of conduct links to landing page by @atravitz in #2047
- remove perses atommapper and scorer by @atravitz in #1943
- Update pull request template for AI disclosure by @IAlibay in #2051
- Release/v1.12.0 by @atravitz in #2053
Full Changelog: v1.11.1...v1.12.0