Helpful Resources
- For installation and configuration, please refer to the Atlas Setup Guide
- For an overview of ATLAS please refer to the Atlas Video Tutorials.
Fixes
- Data Sources
- Fixed precision on data density plots (#1535)
- Fixed description on person plot (#1458)
- Fixed rounding in data density box plot (#1536)
- Fixed data source display with security enabled (#1441)
- Removed extraneous calls to WebAPI (#1715)
- Fixed ATC display heading in drug era report (#1897)
- Fixes issue when data source name includes spaces (#1914)
- Vocabulary Search
- Fix column visibility display (#1491)
- Restores advanced search capability (#1570)
- Handle special characters in search string (#1653)
- Selecting all concepts removes previously chosen filters (#1526)
- Retrieve concept counts for non-standard concepts (#1725)
- Fixed display when navigating to concept from ancestor display (#1865)
- Concept Sets
- Added error message when import fails (#1529)
- Ability to import into an open concept set (#667, #1525)
- Fixes included concept display when adding from the vocabulary (#1518)
- Fixed ability to edit a design after copy with security enabled (#1599)
- Fixed importing large lists of concepts (#1532)
- Fixed stale reference to concept set after deletion (#1750)
- Fixed included concepts display after optimization (#1761)
- Fixed negative control link display (#1888)
- Fixed included source codes display (#1852)
- Cohort Definition
- Fixes generation status error when running cohort reporting (#1606)
- Add visual feedback when selecting a concept set (#1615)
- Provide flexibility in how to restrict events based on observation period (#43)
- Fixed export for print friendly to copy the full text (#1547)
- Restructure code in criteria hierarchy (#1681)
- Inclusion criteria for location region (#1669) and location distance filter for visit occurrence (#1697)
- Added labels to attrition view to display the inclusion rule information (#1129)
- Fixes error thrown when switching exit criteria (#1688)
- Fixed timezone display on cohort/characterization lists (#1748)
- Fixed notification link for cohort reporting (#1755)
- Improved sorting performance for large lists of cohort definitions (#1571)
- Fixes adding concepts from included concepts list in a cohort definition (#1850)
- Additional checks for displaying the concept set export button in a cohort definition (#1853)
- Fixes tooltip message for cohort definition generation (#1860)
- Fixes condition & drug era treemap drilldowns in cohort reporting (OHDSI/WebAPI#933)
- Fixed the status panel when generating cohort reports (#1920)
- Cohort Characterization
- Enable re-generation of failed jobs (#1494)
- Prevent execution of characterization with no cohorts specified (#1363)
- Grey out covariates that are < 0.1 in standardized difference (#1144)
- Default sort by standardized difference and median (#1127)
- Fixed ability to edit a design after copy with security enabled (#1612)
- Properly escape double quotes for covariate names (#1698)
- Fixed proportions when using the 'explore' feature (#1692)
- Fixed Feature Analysis Modal (#1744, #1779)
- Revised the "explore" button for navigating results (#1757)
- Fixed the characterization comparison plot display (#1758)
- Fixed prompt message when closing an empty feature analysis (#1875)
- Removed custom 'preset' feature type from feature analysis definition editor (#1925)
- Cohort Pathways
- Incidence Rates
- Profiles
- Estimation/Prediction
- Use a consistent createdBy formatter to prevent problems in estimation and prediction list display (#1705)
- Display an error if import fails (#1683)
- Fix package name entry (#1533)
- Fixes refresh of summary display of study design after editing (#1710)
- Estimation only - fixed max cohort drop down for positive control synthesis (#1658)
- Fixes an error thrown when saving a PLP study (#1708)
- Fixed collapsible area icon (#1756)
- Security
- Added ability to clone/copy/import/export roles (#1269)
- Fixed session expiration message (#1677)
- Display a full user name instead of a login id (#1289)
- Added "RunAs" functionality (#1723)
- Fixed AD Sync Job (#1729)
- Properly handle unsecured pages after logout (#1767)
- Add confirmation dialog for deleting roles (#1873)
- System
- Don't show date/times for tasks which have not started (#1559)
- Added ability to warm the record count cache on demand (#1407)
- Dispose of data table when containing element is disposed (#1636)
- Ensure all entity names are unique (#1307, #1338, OHDSI/WebAPI#1146)
- Added "id" column to list display for characterizations, pathways (#1550)
- Fixed error when editing a BigQuery data source (#1684)
- Fixed notification hyperlinks for characterization and pathways (#1694)
- Use local CSS file for bootstrap-select (#1726)
- Fixed xss vulnerability in data tables (#1765)
- Lock version of bootstrap select to prevent flex markup issues (#1845)
- Disable exporting unsaved entities (#1884, #1864)
- Change the default sort on all design listing display (#1867, #1908)
- Added HemOnc license agreement (#1921)
- Fixed escape content in links (#1924)
Here is the full list of fixes
Acknowledgements
Thanks to @pavgra, @quveex, @AntonStepanof, Sergey Suvorov, @johnSamilin, @vlbe, @ssuvorov-fls, @aklochkova, @chrisknoll, @wivern, @fdefalco for their contributions and reviews as part of this release.
Testing Results
We have provided high-level test scripts and results to show how the application was tested for this release. Please see the attachments for this release for more details.